miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 34328 0.67 0.926033
Target:  5'- gGCCguccGCaaGGCGACGGccGCGCCGUUc- -3'
miRNA:   3'- -UGGa---CGagCUGCUGCU--UGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 34841 0.67 0.926033
Target:  5'- cGCCggaGCgggCGuCGgaGCGGGCGCCG-CGGg -3'
miRNA:   3'- -UGGa--CGa--GCuGC--UGCUUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 35268 0.66 0.949432
Target:  5'- aACCUGCggcugaaacaccggGugGGCGucguGCGCCcUCGGa -3'
miRNA:   3'- -UGGACGag------------CugCUGCu---UGCGGcAGCC- -5'
10861 3' -56.6 NC_002794.1 + 35852 0.71 0.721714
Target:  5'- cGCCccGCgcgacCGACGACGAgagaacgaacgagagAgGCCGUCGGa -3'
miRNA:   3'- -UGGa-CGa----GCUGCUGCU---------------UgCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 36006 0.69 0.856412
Target:  5'- cGCgggGCUCgGGCGGCGGAaucCGCCGUcCGGc -3'
miRNA:   3'- -UGga-CGAG-CUGCUGCUU---GCGGCA-GCC- -5'
10861 3' -56.6 NC_002794.1 + 36621 1.09 0.004144
Target:  5'- gACCUGCUCGACGACGAACGCCGUCGGc -3'
miRNA:   3'- -UGGACGAGCUGCUGCUUGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 37068 0.71 0.746186
Target:  5'- uCCUcguaCUCGGCGaaGCGGGCGCCGUUGa -3'
miRNA:   3'- uGGAc---GAGCUGC--UGCUUGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 37742 0.71 0.754519
Target:  5'- cGCC-GC-CGGCGGCGGcgcggcgGCGCCGgCGGg -3'
miRNA:   3'- -UGGaCGaGCUGCUGCU-------UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 38172 0.69 0.841149
Target:  5'- gGCUgcGCUCGGCGACGAAgGCguuccuggucuCGUCGu -3'
miRNA:   3'- -UGGa-CGAGCUGCUGCUUgCG-----------GCAGCc -5'
10861 3' -56.6 NC_002794.1 + 42654 0.68 0.87789
Target:  5'- gGCCgaaGC-CGACGGCGc-CGCCGgcaCGGg -3'
miRNA:   3'- -UGGa--CGaGCUGCUGCuuGCGGCa--GCC- -5'
10861 3' -56.6 NC_002794.1 + 43167 0.71 0.715038
Target:  5'- ---aGCUCGGCGACGGaauagcgguugcgcGCGCCGacCGGg -3'
miRNA:   3'- uggaCGAGCUGCUGCU--------------UGCGGCa-GCC- -5'
10861 3' -56.6 NC_002794.1 + 43320 0.69 0.832452
Target:  5'- gUCUGCUCGAaGACGAccacgcaGCGCCGgUUGa -3'
miRNA:   3'- uGGACGAGCUgCUGCU-------UGCGGC-AGCc -5'
10861 3' -56.6 NC_002794.1 + 44203 0.68 0.884651
Target:  5'- aGCCggGC-CGACGuccggcuCGGGCGCCGagGGc -3'
miRNA:   3'- -UGGa-CGaGCUGCu------GCUUGCGGCagCC- -5'
10861 3' -56.6 NC_002794.1 + 44324 0.66 0.935888
Target:  5'- cGCgaGCgCGGCGGCGAagaagacgGCGCCGgCGa -3'
miRNA:   3'- -UGgaCGaGCUGCUGCU--------UGCGGCaGCc -5'
10861 3' -56.6 NC_002794.1 + 44425 0.72 0.698696
Target:  5'- cGCCgagcgGCUCGACGACaccGGCGCgcccgcccggaCGUCGGc -3'
miRNA:   3'- -UGGa----CGAGCUGCUGc--UUGCG-----------GCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 44710 0.71 0.75544
Target:  5'- gGCC-GCgaccgCGGCGACGucggccGGCGCCGcCGGa -3'
miRNA:   3'- -UGGaCGa----GCUGCUGC------UUGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 46235 0.66 0.946556
Target:  5'- aGCUcGCUCGcCGGCGGcucguccgcuuccucGgGCCGUCGa -3'
miRNA:   3'- -UGGaCGAGCuGCUGCU---------------UgCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 46310 0.74 0.552201
Target:  5'- uCCgaGCgCGGCGGCGAcgGCGCCGUCGc -3'
miRNA:   3'- uGGa-CGaGCUGCUGCU--UGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 48051 0.66 0.952976
Target:  5'- uGCgUGCUgggcaCGGCGcUGAugGCCGgccagCGGg -3'
miRNA:   3'- -UGgACGA-----GCUGCuGCUugCGGCa----GCC- -5'
10861 3' -56.6 NC_002794.1 + 48605 0.68 0.884651
Target:  5'- cGCCgucgGCgUCGGCcucaGACgcgGAGCgGCCGUCGGg -3'
miRNA:   3'- -UGGa---CG-AGCUG----CUG---CUUG-CGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.