miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 3' -56.6 NC_002794.1 + 194934 0.73 0.640086
Target:  5'- cACCaGCUcCGACGGCG-ACGUCGUCa- -3'
miRNA:   3'- -UGGaCGA-GCUGCUGCuUGCGGCAGcc -5'
10861 3' -56.6 NC_002794.1 + 193781 0.68 0.870926
Target:  5'- cGCCcGCUCGAucgccCGACGA-CGCCGgCGc -3'
miRNA:   3'- -UGGaCGAGCU-----GCUGCUuGCGGCaGCc -5'
10861 3' -56.6 NC_002794.1 + 192809 0.66 0.944865
Target:  5'- cACgUGCUCcACGugGAACagGCCGgUCGc -3'
miRNA:   3'- -UGgACGAGcUGCugCUUG--CGGC-AGCc -5'
10861 3' -56.6 NC_002794.1 + 192656 0.66 0.952976
Target:  5'- cGCCgcgcGCUCGcGCGAcuCGAAgcgccggcCGCCGUCGu -3'
miRNA:   3'- -UGGa---CGAGC-UGCU--GCUU--------GCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 191998 0.67 0.909598
Target:  5'- gGCCgGgaCGguaGCGGCGGugGCCG-CGGc -3'
miRNA:   3'- -UGGaCgaGC---UGCUGCUugCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 189924 0.7 0.791371
Target:  5'- cGCCcGCUCGccCGACGGcCGCCGaUGGa -3'
miRNA:   3'- -UGGaCGAGCu-GCUGCUuGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 189836 0.66 0.931071
Target:  5'- cGCCacagcgggGuCUCGGCcGCGGA-GCCGUCGGc -3'
miRNA:   3'- -UGGa-------C-GAGCUGcUGCUUgCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 189031 0.66 0.935416
Target:  5'- aGCC-GCUCGaccgccaGCGGCGGGCuGCgCGUCGc -3'
miRNA:   3'- -UGGaCGAGC-------UGCUGCUUG-CG-GCAGCc -5'
10861 3' -56.6 NC_002794.1 + 188334 0.67 0.915296
Target:  5'- cGCC-GC-CGcCGGCG-GCGCCGUCGc -3'
miRNA:   3'- -UGGaCGaGCuGCUGCuUGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 188248 0.66 0.940486
Target:  5'- gACCgGCggCGGCGGCGGuaGCGgCGggcCGGg -3'
miRNA:   3'- -UGGaCGa-GCUGCUGCU--UGCgGCa--GCC- -5'
10861 3' -56.6 NC_002794.1 + 187576 0.68 0.87789
Target:  5'- uACCcGCcgUCGGCG-CGGcCGCCGUCGc -3'
miRNA:   3'- -UGGaCG--AGCUGCuGCUuGCGGCAGCc -5'
10861 3' -56.6 NC_002794.1 + 187455 0.69 0.856412
Target:  5'- uGCCgccGCUCGGCGuCGcucGGCGCgCGcCGGg -3'
miRNA:   3'- -UGGa--CGAGCUGCuGC---UUGCG-GCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 187085 0.75 0.495595
Target:  5'- -gCUGCUCGccACGugGAACaGCCcGUCGGu -3'
miRNA:   3'- ugGACGAGC--UGCugCUUG-CGG-CAGCC- -5'
10861 3' -56.6 NC_002794.1 + 185854 0.68 0.884651
Target:  5'- aGCCacaggGCUCGcCGAauu-CGCCGUUGGg -3'
miRNA:   3'- -UGGa----CGAGCuGCUgcuuGCGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 185172 0.68 0.863766
Target:  5'- cGCCgGCgCGGCG-CGGucgGCGCgGUCGGc -3'
miRNA:   3'- -UGGaCGaGCUGCuGCU---UGCGgCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 184573 0.67 0.915296
Target:  5'- cGCCgccGCggCGGCGGCGGccACGCgCGgccgCGGg -3'
miRNA:   3'- -UGGa--CGa-GCUGCUGCU--UGCG-GCa---GCC- -5'
10861 3' -56.6 NC_002794.1 + 183832 0.68 0.884651
Target:  5'- cGCCUccgucGC-CGACGACaGGCucuccgucgcgGCCGUCGGg -3'
miRNA:   3'- -UGGA-----CGaGCUGCUGcUUG-----------CGGCAGCC- -5'
10861 3' -56.6 NC_002794.1 + 182581 0.67 0.920774
Target:  5'- uCCgUGCgggCGACGAUGGucGCGuuGUCGc -3'
miRNA:   3'- uGG-ACGa--GCUGCUGCU--UGCggCAGCc -5'
10861 3' -56.6 NC_002794.1 + 182533 0.66 0.931071
Target:  5'- cACCaGCgCGGCaGCGAcuGCGCCG-CGGc -3'
miRNA:   3'- -UGGaCGaGCUGcUGCU--UGCGGCaGCC- -5'
10861 3' -56.6 NC_002794.1 + 180952 0.7 0.773638
Target:  5'- uCCgcgGC-CGACG-CGGACuCCGUCGGg -3'
miRNA:   3'- uGGa--CGaGCUGCuGCUUGcGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.