miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10861 5' -51.7 NC_002794.1 + 115690 0.66 0.992872
Target:  5'- gUCUCGAAGGAGgaccCGUCGGUcGCGu -3'
miRNA:   3'- -AGGGCUUUCUCaaacGCGGUCAuCGU- -5'
10861 5' -51.7 NC_002794.1 + 49779 0.66 0.991812
Target:  5'- cCCCGGAGGcGGUUggGCacgagccgaGCCAGgAGCAg -3'
miRNA:   3'- aGGGCUUUC-UCAAa-CG---------CGGUCaUCGU- -5'
10861 5' -51.7 NC_002794.1 + 95811 0.66 0.990631
Target:  5'- -aCCGggGGAGcggcgGCGgCCGGgggAGCGg -3'
miRNA:   3'- agGGCuuUCUCaaa--CGC-GGUCa--UCGU- -5'
10861 5' -51.7 NC_002794.1 + 153604 0.66 0.9889
Target:  5'- cCCUGGAAGAGacgGCGCgggccgccuaucccUGGUGGCAc -3'
miRNA:   3'- aGGGCUUUCUCaaaCGCG--------------GUCAUCGU- -5'
10861 5' -51.7 NC_002794.1 + 59531 0.67 0.987871
Target:  5'- aCCCGGcgcuggcgcAcGAGUac-CGCCAGUGGCAc -3'
miRNA:   3'- aGGGCU---------UuCUCAaacGCGGUCAUCGU- -5'
10861 5' -51.7 NC_002794.1 + 190011 0.67 0.986273
Target:  5'- gCCCGuccGGGUccaucgGCgGCCGGUAGCGc -3'
miRNA:   3'- aGGGCuuuCUCAaa----CG-CGGUCAUCGU- -5'
10861 5' -51.7 NC_002794.1 + 58372 0.67 0.980507
Target:  5'- gCCCGAcuuccAGGAGgcgcgcggGCGCCAGcugcuggAGCAc -3'
miRNA:   3'- aGGGCU-----UUCUCaaa-----CGCGGUCa------UCGU- -5'
10861 5' -51.7 NC_002794.1 + 108366 0.67 0.980507
Target:  5'- --gCGGAGGAGgaccggGCGCCGG-AGCGg -3'
miRNA:   3'- aggGCUUUCUCaaa---CGCGGUCaUCGU- -5'
10861 5' -51.7 NC_002794.1 + 38114 0.67 0.980507
Target:  5'- aCgCGGGAGAGcc-GCGCCAGcuggGGCGu -3'
miRNA:   3'- aGgGCUUUCUCaaaCGCGGUCa---UCGU- -5'
10861 5' -51.7 NC_002794.1 + 101247 0.68 0.975248
Target:  5'- cUCCGGcgcgcagcGGGGGgccgcccccgGCGCCGGUGGCGg -3'
miRNA:   3'- aGGGCU--------UUCUCaaa-------CGCGGUCAUCGU- -5'
10861 5' -51.7 NC_002794.1 + 138493 0.69 0.963846
Target:  5'- gUCCCGgcGGGGUUcaUGuCGCCGGUcccGGUc -3'
miRNA:   3'- -AGGGCuuUCUCAA--AC-GCGGUCA---UCGu -5'
10861 5' -51.7 NC_002794.1 + 191657 0.7 0.917762
Target:  5'- gCCCGccGGGGgacgGCGCCGGcAGCGg -3'
miRNA:   3'- aGGGCuuUCUCaaa-CGCGGUCaUCGU- -5'
10861 5' -51.7 NC_002794.1 + 1256 0.71 0.911795
Target:  5'- gCCCGGAGGccAGUgUGCGCCAGccaccGGCc -3'
miRNA:   3'- aGGGCUUUC--UCAaACGCGGUCa----UCGu -5'
10861 5' -51.7 NC_002794.1 + 36660 1.1 0.00731
Target:  5'- aUCCCGAAAGAGUUUGCGCCAGUAGCAg -3'
miRNA:   3'- -AGGGCUUUCUCAAACGCGGUCAUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.