Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10861 | 5' | -51.7 | NC_002794.1 | + | 115690 | 0.66 | 0.992872 |
Target: 5'- gUCUCGAAGGAGgaccCGUCGGUcGCGu -3' miRNA: 3'- -AGGGCUUUCUCaaacGCGGUCAuCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 1256 | 0.71 | 0.911795 |
Target: 5'- gCCCGGAGGccAGUgUGCGCCAGccaccGGCc -3' miRNA: 3'- aGGGCUUUC--UCAaACGCGGUCa----UCGu -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 191657 | 0.7 | 0.917762 |
Target: 5'- gCCCGccGGGGgacgGCGCCGGcAGCGg -3' miRNA: 3'- aGGGCuuUCUCaaa-CGCGGUCaUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 58372 | 0.67 | 0.980507 |
Target: 5'- gCCCGAcuuccAGGAGgcgcgcggGCGCCAGcugcuggAGCAc -3' miRNA: 3'- aGGGCU-----UUCUCaaa-----CGCGGUCa------UCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 101247 | 0.68 | 0.975248 |
Target: 5'- cUCCGGcgcgcagcGGGGGgccgcccccgGCGCCGGUGGCGg -3' miRNA: 3'- aGGGCU--------UUCUCaaa-------CGCGGUCAUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 138493 | 0.69 | 0.963846 |
Target: 5'- gUCCCGgcGGGGUUcaUGuCGCCGGUcccGGUc -3' miRNA: 3'- -AGGGCuuUCUCAA--AC-GCGGUCA---UCGu -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 108366 | 0.67 | 0.980507 |
Target: 5'- --gCGGAGGAGgaccggGCGCCGG-AGCGg -3' miRNA: 3'- aggGCUUUCUCaaa---CGCGGUCaUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 190011 | 0.67 | 0.986273 |
Target: 5'- gCCCGuccGGGUccaucgGCgGCCGGUAGCGc -3' miRNA: 3'- aGGGCuuuCUCAaa----CG-CGGUCAUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 38114 | 0.67 | 0.980507 |
Target: 5'- aCgCGGGAGAGcc-GCGCCAGcuggGGCGu -3' miRNA: 3'- aGgGCUUUCUCaaaCGCGGUCa---UCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 59531 | 0.67 | 0.987871 |
Target: 5'- aCCCGGcgcuggcgcAcGAGUac-CGCCAGUGGCAc -3' miRNA: 3'- aGGGCU---------UuCUCAaacGCGGUCAUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 153604 | 0.66 | 0.9889 |
Target: 5'- cCCUGGAAGAGacgGCGCgggccgccuaucccUGGUGGCAc -3' miRNA: 3'- aGGGCUUUCUCaaaCGCG--------------GUCAUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 95811 | 0.66 | 0.990631 |
Target: 5'- -aCCGggGGAGcggcgGCGgCCGGgggAGCGg -3' miRNA: 3'- agGGCuuUCUCaaa--CGC-GGUCa--UCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 49779 | 0.66 | 0.991812 |
Target: 5'- cCCCGGAGGcGGUUggGCacgagccgaGCCAGgAGCAg -3' miRNA: 3'- aGGGCUUUC-UCAAa-CG---------CGGUCaUCGU- -5' |
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10861 | 5' | -51.7 | NC_002794.1 | + | 36660 | 1.1 | 0.00731 |
Target: 5'- aUCCCGAAAGAGUUUGCGCCAGUAGCAg -3' miRNA: 3'- -AGGGCUUUCUCAAACGCGGUCAUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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