miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 187463 0.66 0.937332
Target:  5'- cUCGGCGUcgCUCGgcgcGCgccgggccgaggacgAGGCcGCGCAg -3'
miRNA:   3'- -AGCCGCAa-GAGCa---UG---------------UCCGuCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 129844 0.66 0.937332
Target:  5'- -aGGCGgagcggaaccuccgUCgCGaACGGGgGGCGCACg -3'
miRNA:   3'- agCCGCa-------------AGaGCaUGUCCgUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 152619 0.66 0.935409
Target:  5'- gCGGCGcaaacgCUCGUccuGGGCGGCGUucgaGCg -3'
miRNA:   3'- aGCCGCaa----GAGCAug-UCCGUCGCG----UG- -5'
10862 3' -56.3 NC_002794.1 + 59513 0.66 0.935409
Target:  5'- aCGGCGgcuUCcCGcUGCAcccGGCgcuGGCGCACg -3'
miRNA:   3'- aGCCGCa--AGaGC-AUGU---CCG---UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 104776 0.66 0.935409
Target:  5'- cCGGCGcUC-CGacacgccgACAGGCGGUGCuGCu -3'
miRNA:   3'- aGCCGCaAGaGCa-------UGUCCGUCGCG-UG- -5'
10862 3' -56.3 NC_002794.1 + 90935 0.66 0.935409
Target:  5'- aCGGCGa---CGUggGCGGGCuGUGCGCc -3'
miRNA:   3'- aGCCGCaagaGCA--UGUCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 143183 0.66 0.933943
Target:  5'- gCGGCgGUUCUCG-ACGuGCAGCuucucgcggucccaGCGCa -3'
miRNA:   3'- aGCCG-CAAGAGCaUGUcCGUCG--------------CGUG- -5'
10862 3' -56.3 NC_002794.1 + 129066 0.66 0.930439
Target:  5'- aCGGUGUg-UCGcgGCuGGCGGCGgACc -3'
miRNA:   3'- aGCCGCAagAGCa-UGuCCGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 142962 0.66 0.930439
Target:  5'- gCGGCGUcgagcucCUCGUcgAgGGGCuGCGUGCc -3'
miRNA:   3'- aGCCGCAa------GAGCA--UgUCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 882 0.66 0.930439
Target:  5'- gUCGGCGUg--CGcGCGGGCcgGGUGC-Ca -3'
miRNA:   3'- -AGCCGCAagaGCaUGUCCG--UCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 30207 0.66 0.925768
Target:  5'- -gGGCGUgauguacguguuccgUUCGUAC-GGCAGcCGCAUc -3'
miRNA:   3'- agCCGCAa--------------GAGCAUGuCCGUC-GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182448 0.66 0.925237
Target:  5'- cUCGGU---CUCGgagaGCGcGGCGGUGCGCg -3'
miRNA:   3'- -AGCCGcaaGAGCa---UGU-CCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 68200 0.66 0.925237
Target:  5'- cCGGCcg-CUC-UACuGGCAGCGCu- -3'
miRNA:   3'- aGCCGcaaGAGcAUGuCCGUCGCGug -5'
10862 3' -56.3 NC_002794.1 + 112637 0.66 0.924704
Target:  5'- gCGGC-UUCUCGagcaGCAGGCAGaggcucuCGCAg -3'
miRNA:   3'- aGCCGcAAGAGCa---UGUCCGUC-------GCGUg -5'
10862 3' -56.3 NC_002794.1 + 89986 0.66 0.919802
Target:  5'- cCGGCGUUCg---ACcGGU-GCGCACg -3'
miRNA:   3'- aGCCGCAAGagcaUGuCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 10769 0.66 0.919802
Target:  5'- aCGGCGg---CGUGgAGcuGCAGUGCGCc -3'
miRNA:   3'- aGCCGCaagaGCAUgUC--CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 118248 0.66 0.914136
Target:  5'- gUCGGCGggCUgGaggucgGCcgGGGCGGCgGCGCc -3'
miRNA:   3'- -AGCCGCaaGAgCa-----UG--UCCGUCG-CGUG- -5'
10862 3' -56.3 NC_002794.1 + 34264 0.66 0.914136
Target:  5'- -aGGCGgaCcgCGcGCAGGCGGCcaGCGCc -3'
miRNA:   3'- agCCGCaaGa-GCaUGUCCGUCG--CGUG- -5'
10862 3' -56.3 NC_002794.1 + 116467 0.66 0.914136
Target:  5'- gCGGCcgGUUCUUgGUGCcGGCguAGCGCAg -3'
miRNA:   3'- aGCCG--CAAGAG-CAUGuCCG--UCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 50779 0.66 0.914136
Target:  5'- aCGGCGcgUCUCG----GGCGGCGCc- -3'
miRNA:   3'- aGCCGCa-AGAGCauguCCGUCGCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.