miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 36483 1.09 0.003485
Target:  5'- cUCGGCGUUCUCGUACAGGCAGCGCACc -3'
miRNA:   3'- -AGCCGCAAGAGCAUGUCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 195110 0.82 0.187734
Target:  5'- aCGGCG-UCUCGUGCGcccGCGGCGCGCg -3'
miRNA:   3'- aGCCGCaAGAGCAUGUc--CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 71337 0.75 0.482127
Target:  5'- gCGGCGaUgUCGUccgcCAGGCGGCGCAg -3'
miRNA:   3'- aGCCGCaAgAGCAu---GUCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 194963 0.74 0.497192
Target:  5'- gCGGCacgaacgccggCUCGUACAGGCAcagcgccgcGCGCACg -3'
miRNA:   3'- aGCCGcaa--------GAGCAUGUCCGU---------CGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 43900 0.74 0.500992
Target:  5'- cCGGCG-UCUCGUGaGGaGCGGCGCGg -3'
miRNA:   3'- aGCCGCaAGAGCAUgUC-CGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 137473 0.74 0.510546
Target:  5'- gUCGGCGgcCUCGUAgA-GCAGCGcCACg -3'
miRNA:   3'- -AGCCGCaaGAGCAUgUcCGUCGC-GUG- -5'
10862 3' -56.3 NC_002794.1 + 59212 0.74 0.539639
Target:  5'- gUCGGCG-UCUCG-GCc-GCGGCGCGCg -3'
miRNA:   3'- -AGCCGCaAGAGCaUGucCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 71304 0.73 0.569273
Target:  5'- cCGGCGcgCUCGgGC-GGCgAGCGCGCc -3'
miRNA:   3'- aGCCGCaaGAGCaUGuCCG-UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 56448 0.73 0.589253
Target:  5'- -aGGCGUUCaCGUagACGGGCGcgcuGCGCGCc -3'
miRNA:   3'- agCCGCAAGaGCA--UGUCCGU----CGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 68925 0.73 0.589253
Target:  5'- gCGGCGUcCUCGUcgcccGCGGGCcGCgGCGCc -3'
miRNA:   3'- aGCCGCAaGAGCA-----UGUCCGuCG-CGUG- -5'
10862 3' -56.3 NC_002794.1 + 130571 0.72 0.619433
Target:  5'- gUUGGCGaggUCUCGagcaaguCGGGCAGCGCu- -3'
miRNA:   3'- -AGCCGCa--AGAGCau-----GUCCGUCGCGug -5'
10862 3' -56.3 NC_002794.1 + 90976 0.72 0.629522
Target:  5'- uUCGGCGUggcCUCGUAcCGGGCcgaggcggAGCGgGCc -3'
miRNA:   3'- -AGCCGCAa--GAGCAU-GUCCG--------UCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 114005 0.72 0.645664
Target:  5'- -aGGCGccggaggagcgaCUCGUACAGGCGGgGCAg -3'
miRNA:   3'- agCCGCaa----------GAGCAUGUCCGUCgCGUg -5'
10862 3' -56.3 NC_002794.1 + 53905 0.72 0.659768
Target:  5'- gCGGCGUcCUCGUcGCcgucGGCGGCGC-Cg -3'
miRNA:   3'- aGCCGCAaGAGCA-UGu---CCGUCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 108316 0.72 0.659768
Target:  5'- cCGGCGgugggUCUUGgAC-GGCGGCGCAg -3'
miRNA:   3'- aGCCGCa----AGAGCaUGuCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 87371 0.71 0.689819
Target:  5'- gCGGCGUUCU-----GGGCGGCGCGg -3'
miRNA:   3'- aGCCGCAAGAgcaugUCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 150740 0.71 0.689819
Target:  5'- aCcGCGUUCcCGUGCGuGCAGCGCAa -3'
miRNA:   3'- aGcCGCAAGaGCAUGUcCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 37269 0.71 0.699754
Target:  5'- gUCGGCGgg--CGcGCGGGCgcGGCGUACa -3'
miRNA:   3'- -AGCCGCaagaGCaUGUCCG--UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 142387 0.71 0.709634
Target:  5'- gCGGCGgagacggCg-GUGCAGGCGGCGUcgGCg -3'
miRNA:   3'- aGCCGCaa-----GagCAUGUCCGUCGCG--UG- -5'
10862 3' -56.3 NC_002794.1 + 117475 0.7 0.748425
Target:  5'- gUCGGCGUaCUCGUGgAuGGC-GUGCAg -3'
miRNA:   3'- -AGCCGCAaGAGCAUgU-CCGuCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.