miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 143313 0.7 0.757898
Target:  5'- gCGGCGggauggaagUCggucgCGUGCucGGGCAGCGgGCu -3'
miRNA:   3'- aGCCGCa--------AGa----GCAUG--UCCGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 102136 0.7 0.757898
Target:  5'- aCaGCGUcUUCGUGCGcuucGGCGGCGUGCg -3'
miRNA:   3'- aGcCGCAaGAGCAUGU----CCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 104469 0.69 0.776508
Target:  5'- gCGGCGUgugCagGaUGCGGGCGGC-CACg -3'
miRNA:   3'- aGCCGCAa--GagC-AUGUCCGUCGcGUG- -5'
10862 3' -56.3 NC_002794.1 + 105545 0.69 0.785629
Target:  5'- cCGGCGgcggCUCGggcgaacggAUAGGguGCGCGu -3'
miRNA:   3'- aGCCGCaa--GAGCa--------UGUCCguCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 88192 0.69 0.785629
Target:  5'- -aGGgGggCUgCGuUACGGGCAGCGgGCa -3'
miRNA:   3'- agCCgCaaGA-GC-AUGUCCGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 121164 0.69 0.785629
Target:  5'- -aGGCGUUCagaUCGgcaGCGGGCucCGCACg -3'
miRNA:   3'- agCCGCAAG---AGCa--UGUCCGucGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 26652 0.69 0.794617
Target:  5'- aCGGCGgccggCUCGUcgGCGGGguGgaGCGCc -3'
miRNA:   3'- aGCCGCaa---GAGCA--UGUCCguCg-CGUG- -5'
10862 3' -56.3 NC_002794.1 + 145318 0.69 0.803462
Target:  5'- cCGGCGcgCg---GCGGGCGGCGCuCg -3'
miRNA:   3'- aGCCGCaaGagcaUGUCCGUCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 190083 0.69 0.812155
Target:  5'- -gGGCGUUCUCGU-CGcGCAGCuccCACg -3'
miRNA:   3'- agCCGCAAGAGCAuGUcCGUCGc--GUG- -5'
10862 3' -56.3 NC_002794.1 + 107214 0.69 0.82069
Target:  5'- cCGGCGc---CGc-CGGGCGGCGCGCg -3'
miRNA:   3'- aGCCGCaagaGCauGUCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 102630 0.68 0.829059
Target:  5'- cUGGCGgucaUC-CGccgGCuGGCGGCGCGCu -3'
miRNA:   3'- aGCCGCa---AGaGCa--UGuCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 36947 0.68 0.829059
Target:  5'- gUCcGCG-UCgcgCGgcgGCAGGCAGuCGCGCa -3'
miRNA:   3'- -AGcCGCaAGa--GCa--UGUCCGUC-GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 113874 0.68 0.845266
Target:  5'- -aGGCGcgCUCG-GCc-GCGGCGCGCg -3'
miRNA:   3'- agCCGCaaGAGCaUGucCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 54916 0.68 0.845266
Target:  5'- -aGGCGUUCaCGcGCAGcguccGCAGCGCGa -3'
miRNA:   3'- agCCGCAAGaGCaUGUC-----CGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 37872 0.68 0.853091
Target:  5'- gUCGGCG-UCUCGggcgGCggGGGCGGUGgCGg -3'
miRNA:   3'- -AGCCGCaAGAGCa---UG--UCCGUCGC-GUg -5'
10862 3' -56.3 NC_002794.1 + 92252 0.68 0.853091
Target:  5'- cUCGGCGgcgUCgcuggcggCGgcgcCGGGCgaGGCGCGCa -3'
miRNA:   3'- -AGCCGCa--AGa-------GCau--GUCCG--UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 80818 0.68 0.853091
Target:  5'- cCGGCGUgagCUCuuccccgAGGCGGCGCGg -3'
miRNA:   3'- aGCCGCAa--GAGcaug---UCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 113655 0.68 0.860722
Target:  5'- cCGGCGUcCUCGgcgucCAGcGCGGCGaGCa -3'
miRNA:   3'- aGCCGCAaGAGCau---GUC-CGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 181184 0.68 0.860722
Target:  5'- aCGGCGgacaCUCcaaGUACAGGCcGCGguCu -3'
miRNA:   3'- aGCCGCaa--GAG---CAUGUCCGuCGCguG- -5'
10862 3' -56.3 NC_002794.1 + 111776 0.68 0.868152
Target:  5'- -gGGCGggCUCGUucguCAGG-AGCGCccGCa -3'
miRNA:   3'- agCCGCaaGAGCAu---GUCCgUCGCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.