miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 113120 0.66 0.912391
Target:  5'- cUGGCGcUUCUcCGUguccgagaggaaggGCGGGCgcgucagcguguAGCGCGCg -3'
miRNA:   3'- aGCCGC-AAGA-GCA--------------UGUCCG------------UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 138119 0.67 0.902113
Target:  5'- -gGGCGUggugCUCGUcgccggucuCGGGCGGCGguUu -3'
miRNA:   3'- agCCGCAa---GAGCAu--------GUCCGUCGCguG- -5'
10862 3' -56.3 NC_002794.1 + 149256 0.67 0.902113
Target:  5'- gCGGCGccaccaccCUCGUccccGCcGGCGGCGCGg -3'
miRNA:   3'- aGCCGCaa------GAGCA----UGuCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 55728 0.67 0.902113
Target:  5'- aCGGCGUUgUgGUAC-GGCAcCGCGa -3'
miRNA:   3'- aGCCGCAAgAgCAUGuCCGUcGCGUg -5'
10862 3' -56.3 NC_002794.1 + 112840 0.67 0.89576
Target:  5'- aCGGCug-CUCGUcggcgcgccgcaGCAGcugcuGCAGCGCGCc -3'
miRNA:   3'- aGCCGcaaGAGCA------------UGUC-----CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 45733 0.67 0.89576
Target:  5'- -gGGCG-UCUCcacgUAGcGCAGCGCGCg -3'
miRNA:   3'- agCCGCaAGAGcau-GUC-CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 190007 0.67 0.89576
Target:  5'- aUCGGCccgUCcggguccaUCGgcgGCcGGUAGCGCACg -3'
miRNA:   3'- -AGCCGca-AG--------AGCa--UGuCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 50995 0.67 0.89576
Target:  5'- uUCGGCGcUCUCGUACGcGaucccCGCGCg -3'
miRNA:   3'- -AGCCGCaAGAGCAUGUcCguc--GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 129318 0.67 0.89576
Target:  5'- gCGGUGUUUUCG-ACgcccgGGGCGGCGguUu -3'
miRNA:   3'- aGCCGCAAGAGCaUG-----UCCGUCGCguG- -5'
10862 3' -56.3 NC_002794.1 + 185521 0.67 0.89381
Target:  5'- gUCGGCGUcaugacgcgccucaUCUCGccACccGGCcGCGCGCc -3'
miRNA:   3'- -AGCCGCA--------------AGAGCa-UGu-CCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 117003 0.67 0.889184
Target:  5'- gCGGCG-UCUCGccCAGGUaccAGcCGCGCc -3'
miRNA:   3'- aGCCGCaAGAGCauGUCCG---UC-GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182995 0.67 0.889184
Target:  5'- cCGGCGc-UUCGccGCGGGCGccccGCGCGCg -3'
miRNA:   3'- aGCCGCaaGAGCa-UGUCCGU----CGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 67212 0.67 0.889184
Target:  5'- gCGGUGcgCUCGgcgcCGGGCGGCuaACc -3'
miRNA:   3'- aGCCGCaaGAGCau--GUCCGUCGcgUG- -5'
10862 3' -56.3 NC_002794.1 + 126398 0.67 0.882387
Target:  5'- gCGGCGg---CGUGCGcGGCGGuCGCGa -3'
miRNA:   3'- aGCCGCaagaGCAUGU-CCGUC-GCGUg -5'
10862 3' -56.3 NC_002794.1 + 184958 0.67 0.879608
Target:  5'- cCGGCccgcgcagccgCUCGUcggGCAGcacGCAGCGCGCg -3'
miRNA:   3'- aGCCGcaa--------GAGCA---UGUC---CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182336 0.67 0.875375
Target:  5'- -gGGCGggCgagCGgacggGCGGGCgggugaccgGGCGCACg -3'
miRNA:   3'- agCCGCaaGa--GCa----UGUCCG---------UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 112317 0.67 0.875375
Target:  5'- uUCGGCGc---CGacgGCGGGgAGCGCGCc -3'
miRNA:   3'- -AGCCGCaagaGCa--UGUCCgUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 36352 0.67 0.875375
Target:  5'- cCGGCGUgcgCGgcCAccGGguGCGCGCc -3'
miRNA:   3'- aGCCGCAagaGCauGU--CCguCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 43075 0.67 0.875375
Target:  5'- -gGGCGUUCUC--GCAGcuGUAGCGgACg -3'
miRNA:   3'- agCCGCAAGAGcaUGUC--CGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 58068 0.67 0.875375
Target:  5'- cCGGCGgcggCGggACGGGCGGCccgGCGCc -3'
miRNA:   3'- aGCCGCaagaGCa-UGUCCGUCG---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.