miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 882 0.66 0.930439
Target:  5'- gUCGGCGUg--CGcGCGGGCcgGGUGC-Ca -3'
miRNA:   3'- -AGCCGCAagaGCaUGUCCG--UCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 10769 0.66 0.919802
Target:  5'- aCGGCGg---CGUGgAGcuGCAGUGCGCc -3'
miRNA:   3'- aGCCGCaagaGCAUgUC--CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 18819 0.67 0.874662
Target:  5'- gUCGGCGacCUCGgcCGGcGCggaggagaccucgAGCGCGCc -3'
miRNA:   3'- -AGCCGCaaGAGCauGUC-CG-------------UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 26652 0.69 0.794617
Target:  5'- aCGGCGgccggCUCGUcgGCGGGguGgaGCGCc -3'
miRNA:   3'- aGCCGCaa---GAGCA--UGUCCguCg-CGUG- -5'
10862 3' -56.3 NC_002794.1 + 30207 0.66 0.925768
Target:  5'- -gGGCGUgauguacguguuccgUUCGUAC-GGCAGcCGCAUc -3'
miRNA:   3'- agCCGCAa--------------GAGCAUGuCCGUC-GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 34264 0.66 0.914136
Target:  5'- -aGGCGgaCcgCGcGCAGGCGGCcaGCGCc -3'
miRNA:   3'- agCCGCaaGa-GCaUGUCCGUCG--CGUG- -5'
10862 3' -56.3 NC_002794.1 + 36352 0.67 0.875375
Target:  5'- cCGGCGUgcgCGgcCAccGGguGCGCGCc -3'
miRNA:   3'- aGCCGCAagaGCauGU--CCguCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 36483 1.09 0.003485
Target:  5'- cUCGGCGUUCUCGUACAGGCAGCGCACc -3'
miRNA:   3'- -AGCCGCAAGAGCAUGUCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 36947 0.68 0.829059
Target:  5'- gUCcGCG-UCgcgCGgcgGCAGGCAGuCGCGCa -3'
miRNA:   3'- -AGcCGCaAGa--GCa--UGUCCGUC-GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 37269 0.71 0.699754
Target:  5'- gUCGGCGgg--CGcGCGGGCgcGGCGUACa -3'
miRNA:   3'- -AGCCGCaagaGCaUGUCCG--UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 37872 0.68 0.853091
Target:  5'- gUCGGCG-UCUCGggcgGCggGGGCGGUGgCGg -3'
miRNA:   3'- -AGCCGCaAGAGCa---UG--UCCGUCGC-GUg -5'
10862 3' -56.3 NC_002794.1 + 43075 0.67 0.875375
Target:  5'- -gGGCGUUCUC--GCAGcuGUAGCGgACg -3'
miRNA:   3'- agCCGCAAGAGcaUGUC--CGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 43900 0.74 0.500992
Target:  5'- cCGGCG-UCUCGUGaGGaGCGGCGCGg -3'
miRNA:   3'- aGCCGCaAGAGCAUgUC-CGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 45733 0.67 0.89576
Target:  5'- -gGGCG-UCUCcacgUAGcGCAGCGCGCg -3'
miRNA:   3'- agCCGCaAGAGcau-GUC-CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 50779 0.66 0.914136
Target:  5'- aCGGCGcgUCUCG----GGCGGCGCc- -3'
miRNA:   3'- aGCCGCa-AGAGCauguCCGUCGCGug -5'
10862 3' -56.3 NC_002794.1 + 50995 0.67 0.89576
Target:  5'- uUCGGCGcUCUCGUACGcGaucccCGCGCg -3'
miRNA:   3'- -AGCCGCaAGAGCAUGUcCguc--GCGUG- -5'
10862 3' -56.3 NC_002794.1 + 53905 0.72 0.659768
Target:  5'- gCGGCGUcCUCGUcGCcgucGGCGGCGC-Cg -3'
miRNA:   3'- aGCCGCAaGAGCA-UGu---CCGUCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 54916 0.68 0.845266
Target:  5'- -aGGCGUUCaCGcGCAGcguccGCAGCGCGa -3'
miRNA:   3'- agCCGCAAGaGCaUGUC-----CGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 55728 0.67 0.902113
Target:  5'- aCGGCGUUgUgGUAC-GGCAcCGCGa -3'
miRNA:   3'- aGCCGCAAgAgCAUGuCCGUcGCGUg -5'
10862 3' -56.3 NC_002794.1 + 56448 0.73 0.589253
Target:  5'- -aGGCGUUCaCGUagACGGGCGcgcuGCGCGCc -3'
miRNA:   3'- agCCGCAAGaGCA--UGUCCGU----CGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.