miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 58068 0.67 0.875375
Target:  5'- cCGGCGgcggCGggACGGGCGGCccgGCGCc -3'
miRNA:   3'- aGCCGCaagaGCa-UGUCCGUCG---CGUG- -5'
10862 3' -56.3 NC_002794.1 + 59212 0.74 0.539639
Target:  5'- gUCGGCG-UCUCG-GCc-GCGGCGCGCg -3'
miRNA:   3'- -AGCCGCaAGAGCaUGucCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 59513 0.66 0.935409
Target:  5'- aCGGCGgcuUCcCGcUGCAcccGGCgcuGGCGCACg -3'
miRNA:   3'- aGCCGCa--AGaGC-AUGU---CCG---UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 67212 0.67 0.889184
Target:  5'- gCGGUGcgCUCGgcgcCGGGCGGCuaACc -3'
miRNA:   3'- aGCCGCaaGAGCau--GUCCGUCGcgUG- -5'
10862 3' -56.3 NC_002794.1 + 68200 0.66 0.925237
Target:  5'- cCGGCcg-CUC-UACuGGCAGCGCu- -3'
miRNA:   3'- aGCCGcaaGAGcAUGuCCGUCGCGug -5'
10862 3' -56.3 NC_002794.1 + 68925 0.73 0.589253
Target:  5'- gCGGCGUcCUCGUcgcccGCGGGCcGCgGCGCc -3'
miRNA:   3'- aGCCGCAaGAGCA-----UGUCCGuCG-CGUG- -5'
10862 3' -56.3 NC_002794.1 + 71304 0.73 0.569273
Target:  5'- cCGGCGcgCUCGgGC-GGCgAGCGCGCc -3'
miRNA:   3'- aGCCGCaaGAGCaUGuCCG-UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 71337 0.75 0.482127
Target:  5'- gCGGCGaUgUCGUccgcCAGGCGGCGCAg -3'
miRNA:   3'- aGCCGCaAgAGCAu---GUCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 80818 0.68 0.853091
Target:  5'- cCGGCGUgagCUCuuccccgAGGCGGCGCGg -3'
miRNA:   3'- aGCCGCAa--GAGcaug---UCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 87371 0.71 0.689819
Target:  5'- gCGGCGUUCU-----GGGCGGCGCGg -3'
miRNA:   3'- aGCCGCAAGAgcaugUCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 88192 0.69 0.785629
Target:  5'- -aGGgGggCUgCGuUACGGGCAGCGgGCa -3'
miRNA:   3'- agCCgCaaGA-GC-AUGUCCGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 89986 0.66 0.919802
Target:  5'- cCGGCGUUCg---ACcGGU-GCGCACg -3'
miRNA:   3'- aGCCGCAAGagcaUGuCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 90935 0.66 0.935409
Target:  5'- aCGGCGa---CGUggGCGGGCuGUGCGCc -3'
miRNA:   3'- aGCCGCaagaGCA--UGUCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 90976 0.72 0.629522
Target:  5'- uUCGGCGUggcCUCGUAcCGGGCcgaggcggAGCGgGCc -3'
miRNA:   3'- -AGCCGCAa--GAGCAU-GUCCG--------UCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 92252 0.68 0.853091
Target:  5'- cUCGGCGgcgUCgcuggcggCGgcgcCGGGCgaGGCGCGCa -3'
miRNA:   3'- -AGCCGCa--AGa-------GCau--GUCCG--UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 102136 0.7 0.757898
Target:  5'- aCaGCGUcUUCGUGCGcuucGGCGGCGUGCg -3'
miRNA:   3'- aGcCGCAaGAGCAUGU----CCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 102630 0.68 0.829059
Target:  5'- cUGGCGgucaUC-CGccgGCuGGCGGCGCGCu -3'
miRNA:   3'- aGCCGCa---AGaGCa--UGuCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 104469 0.69 0.776508
Target:  5'- gCGGCGUgugCagGaUGCGGGCGGC-CACg -3'
miRNA:   3'- aGCCGCAa--GagC-AUGUCCGUCGcGUG- -5'
10862 3' -56.3 NC_002794.1 + 104776 0.66 0.935409
Target:  5'- cCGGCGcUC-CGacacgccgACAGGCGGUGCuGCu -3'
miRNA:   3'- aGCCGCaAGaGCa-------UGUCCGUCGCG-UG- -5'
10862 3' -56.3 NC_002794.1 + 105545 0.69 0.785629
Target:  5'- cCGGCGgcggCUCGggcgaacggAUAGGguGCGCGu -3'
miRNA:   3'- aGCCGCaa--GAGCa--------UGUCCguCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.