miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 3' -56.3 NC_002794.1 + 195110 0.82 0.187734
Target:  5'- aCGGCG-UCUCGUGCGcccGCGGCGCGCg -3'
miRNA:   3'- aGCCGCaAGAGCAUGUc--CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 194963 0.74 0.497192
Target:  5'- gCGGCacgaacgccggCUCGUACAGGCAcagcgccgcGCGCACg -3'
miRNA:   3'- aGCCGcaa--------GAGCAUGUCCGU---------CGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 190083 0.69 0.812155
Target:  5'- -gGGCGUUCUCGU-CGcGCAGCuccCACg -3'
miRNA:   3'- agCCGCAAGAGCAuGUcCGUCGc--GUG- -5'
10862 3' -56.3 NC_002794.1 + 190007 0.67 0.89576
Target:  5'- aUCGGCccgUCcggguccaUCGgcgGCcGGUAGCGCACg -3'
miRNA:   3'- -AGCCGca-AG--------AGCa--UGuCCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 187463 0.66 0.937332
Target:  5'- cUCGGCGUcgCUCGgcgcGCgccgggccgaggacgAGGCcGCGCAg -3'
miRNA:   3'- -AGCCGCAa-GAGCa---UG---------------UCCGuCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 185521 0.67 0.89381
Target:  5'- gUCGGCGUcaugacgcgccucaUCUCGccACccGGCcGCGCGCc -3'
miRNA:   3'- -AGCCGCA--------------AGAGCa-UGu-CCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 184958 0.67 0.879608
Target:  5'- cCGGCccgcgcagccgCUCGUcggGCAGcacGCAGCGCGCg -3'
miRNA:   3'- aGCCGcaa--------GAGCA---UGUC---CGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182995 0.67 0.889184
Target:  5'- cCGGCGc-UUCGccGCGGGCGccccGCGCGCg -3'
miRNA:   3'- aGCCGCaaGAGCa-UGUCCGU----CGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182448 0.66 0.925237
Target:  5'- cUCGGU---CUCGgagaGCGcGGCGGUGCGCg -3'
miRNA:   3'- -AGCCGcaaGAGCa---UGU-CCGUCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 182336 0.67 0.875375
Target:  5'- -gGGCGggCgagCGgacggGCGGGCgggugaccgGGCGCACg -3'
miRNA:   3'- agCCGCaaGa--GCa----UGUCCG---------UCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 181184 0.68 0.860722
Target:  5'- aCGGCGgacaCUCcaaGUACAGGCcGCGguCu -3'
miRNA:   3'- aGCCGCaa--GAG---CAUGUCCGuCGCguG- -5'
10862 3' -56.3 NC_002794.1 + 152619 0.66 0.935409
Target:  5'- gCGGCGcaaacgCUCGUccuGGGCGGCGUucgaGCg -3'
miRNA:   3'- aGCCGCaa----GAGCAug-UCCGUCGCG----UG- -5'
10862 3' -56.3 NC_002794.1 + 150740 0.71 0.689819
Target:  5'- aCcGCGUUCcCGUGCGuGCAGCGCAa -3'
miRNA:   3'- aGcCGCAAGaGCAUGUcCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 149256 0.67 0.902113
Target:  5'- gCGGCGccaccaccCUCGUccccGCcGGCGGCGCGg -3'
miRNA:   3'- aGCCGCaa------GAGCA----UGuCCGUCGCGUg -5'
10862 3' -56.3 NC_002794.1 + 145318 0.69 0.803462
Target:  5'- cCGGCGcgCg---GCGGGCGGCGCuCg -3'
miRNA:   3'- aGCCGCaaGagcaUGUCCGUCGCGuG- -5'
10862 3' -56.3 NC_002794.1 + 143313 0.7 0.757898
Target:  5'- gCGGCGggauggaagUCggucgCGUGCucGGGCAGCGgGCu -3'
miRNA:   3'- aGCCGCa--------AGa----GCAUG--UCCGUCGCgUG- -5'
10862 3' -56.3 NC_002794.1 + 143183 0.66 0.933943
Target:  5'- gCGGCgGUUCUCG-ACGuGCAGCuucucgcggucccaGCGCa -3'
miRNA:   3'- aGCCG-CAAGAGCaUGUcCGUCG--------------CGUG- -5'
10862 3' -56.3 NC_002794.1 + 142962 0.66 0.930439
Target:  5'- gCGGCGUcgagcucCUCGUcgAgGGGCuGCGUGCc -3'
miRNA:   3'- aGCCGCAa------GAGCA--UgUCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 142763 0.67 0.875375
Target:  5'- cUUGGUGUgacggaagacgaUCUCGUAC-GGC-GCGUGCa -3'
miRNA:   3'- -AGCCGCA------------AGAGCAUGuCCGuCGCGUG- -5'
10862 3' -56.3 NC_002794.1 + 142387 0.71 0.709634
Target:  5'- gCGGCGgagacggCg-GUGCAGGCGGCGUcgGCg -3'
miRNA:   3'- aGCCGCaa-----GagCAUGUCCGUCGCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.