Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10862 | 3' | -56.3 | NC_002794.1 | + | 36483 | 1.09 | 0.003485 |
Target: 5'- cUCGGCGUUCUCGUACAGGCAGCGCACc -3' miRNA: 3'- -AGCCGCAAGAGCAUGUCCGUCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 68200 | 0.66 | 0.925237 |
Target: 5'- cCGGCcg-CUC-UACuGGCAGCGCu- -3' miRNA: 3'- aGCCGcaaGAGcAUGuCCGUCGCGug -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 89986 | 0.66 | 0.919802 |
Target: 5'- cCGGCGUUCg---ACcGGU-GCGCACg -3' miRNA: 3'- aGCCGCAAGagcaUGuCCGuCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 112637 | 0.66 | 0.924704 |
Target: 5'- gCGGC-UUCUCGagcaGCAGGCAGaggcucuCGCAg -3' miRNA: 3'- aGCCGcAAGAGCa---UGUCCGUC-------GCGUg -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 10769 | 0.66 | 0.919802 |
Target: 5'- aCGGCGg---CGUGgAGcuGCAGUGCGCc -3' miRNA: 3'- aGCCGCaagaGCAUgUC--CGUCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 50779 | 0.66 | 0.914136 |
Target: 5'- aCGGCGcgUCUCG----GGCGGCGCc- -3' miRNA: 3'- aGCCGCa-AGAGCauguCCGUCGCGug -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 116467 | 0.66 | 0.914136 |
Target: 5'- gCGGCcgGUUCUUgGUGCcGGCguAGCGCAg -3' miRNA: 3'- aGCCG--CAAGAG-CAUGuCCG--UCGCGUg -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 34264 | 0.66 | 0.914136 |
Target: 5'- -aGGCGgaCcgCGcGCAGGCGGCcaGCGCc -3' miRNA: 3'- agCCGCaaGa-GCaUGUCCGUCG--CGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 118248 | 0.66 | 0.914136 |
Target: 5'- gUCGGCGggCUgGaggucgGCcgGGGCGGCgGCGCc -3' miRNA: 3'- -AGCCGCaaGAgCa-----UG--UCCGUCG-CGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 182448 | 0.66 | 0.925237 |
Target: 5'- cUCGGU---CUCGgagaGCGcGGCGGUGCGCg -3' miRNA: 3'- -AGCCGcaaGAGCa---UGU-CCGUCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 30207 | 0.66 | 0.925768 |
Target: 5'- -gGGCGUgauguacguguuccgUUCGUAC-GGCAGcCGCAUc -3' miRNA: 3'- agCCGCAa--------------GAGCAUGuCCGUC-GCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 143183 | 0.66 | 0.933943 |
Target: 5'- gCGGCgGUUCUCG-ACGuGCAGCuucucgcggucccaGCGCa -3' miRNA: 3'- aGCCG-CAAGAGCaUGUcCGUCG--------------CGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 90935 | 0.66 | 0.935409 |
Target: 5'- aCGGCGa---CGUggGCGGGCuGUGCGCc -3' miRNA: 3'- aGCCGCaagaGCA--UGUCCGuCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 104776 | 0.66 | 0.935409 |
Target: 5'- cCGGCGcUC-CGacacgccgACAGGCGGUGCuGCu -3' miRNA: 3'- aGCCGCaAGaGCa-------UGUCCGUCGCG-UG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 129844 | 0.66 | 0.937332 |
Target: 5'- -aGGCGgagcggaaccuccgUCgCGaACGGGgGGCGCACg -3' miRNA: 3'- agCCGCa-------------AGaGCaUGUCCgUCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 59513 | 0.66 | 0.935409 |
Target: 5'- aCGGCGgcuUCcCGcUGCAcccGGCgcuGGCGCACg -3' miRNA: 3'- aGCCGCa--AGaGC-AUGU---CCG---UCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 152619 | 0.66 | 0.935409 |
Target: 5'- gCGGCGcaaacgCUCGUccuGGGCGGCGUucgaGCg -3' miRNA: 3'- aGCCGCaa----GAGCAug-UCCGUCGCG----UG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 129066 | 0.66 | 0.930439 |
Target: 5'- aCGGUGUg-UCGcgGCuGGCGGCGgACc -3' miRNA: 3'- aGCCGCAagAGCa-UGuCCGUCGCgUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 142962 | 0.66 | 0.930439 |
Target: 5'- gCGGCGUcgagcucCUCGUcgAgGGGCuGCGUGCc -3' miRNA: 3'- aGCCGCAa------GAGCA--UgUCCGuCGCGUG- -5' |
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10862 | 3' | -56.3 | NC_002794.1 | + | 882 | 0.66 | 0.930439 |
Target: 5'- gUCGGCGUg--CGcGCGGGCcgGGUGC-Ca -3' miRNA: 3'- -AGCCGCAagaGCaUGUCCG--UCGCGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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