miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 22670 0.66 0.798558
Target:  5'- aAGCGcgGUCGCU--UCGCUUCCCGg- -3'
miRNA:   3'- gUCGCa-CAGCGGgcAGCGGAGGGUgg -5'
10862 5' -61 NC_002794.1 + 138401 0.66 0.798558
Target:  5'- aGGCGUcgaGgUCGUCGCCggCCGCCg -3'
miRNA:   3'- gUCGCAcagCgGGCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 146357 0.66 0.798558
Target:  5'- gCGGCG-GcCGCCCGgguaGCCgUCCGCUc -3'
miRNA:   3'- -GUCGCaCaGCGGGCag--CGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 67891 0.66 0.798558
Target:  5'- gAGCGgacucccccUCGCCCGucUCGgCUCCCGgCu -3'
miRNA:   3'- gUCGCac-------AGCGGGC--AGCgGAGGGUgG- -5'
10862 5' -61 NC_002794.1 + 61758 0.66 0.798558
Target:  5'- aGGUGUG-CGaggggggguCCUcUCGCCUCCCgACCg -3'
miRNA:   3'- gUCGCACaGC---------GGGcAGCGGAGGG-UGG- -5'
10862 5' -61 NC_002794.1 + 67835 0.66 0.798558
Target:  5'- cCGGCccgccGUCGCCCGgCGCCg-CCGCg -3'
miRNA:   3'- -GUCGca---CAGCGGGCaGCGGagGGUGg -5'
10862 5' -61 NC_002794.1 + 15091 0.66 0.798558
Target:  5'- aCAGCgGUGUUGCUCGaucccgacgCGCCggagaccgaCCGCCg -3'
miRNA:   3'- -GUCG-CACAGCGGGCa--------GCGGag-------GGUGG- -5'
10862 5' -61 NC_002794.1 + 285 0.66 0.790024
Target:  5'- aCGGCGgcccuggCGCgCCGaaCGCCgggCCCGCCc -3'
miRNA:   3'- -GUCGCaca----GCG-GGCa-GCGGa--GGGUGG- -5'
10862 5' -61 NC_002794.1 + 137132 0.66 0.790024
Target:  5'- ----cUGUCGUCCGUcCGCCcgCCCgGCCg -3'
miRNA:   3'- gucgcACAGCGGGCA-GCGGa-GGG-UGG- -5'
10862 5' -61 NC_002794.1 + 124282 0.66 0.790024
Target:  5'- -cGCGc--CGUCCGUCGUCgCCCGCUu -3'
miRNA:   3'- guCGCacaGCGGGCAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 194259 0.66 0.790024
Target:  5'- aCAGC---UCGCCCGacgcCGCCUCgCACg -3'
miRNA:   3'- -GUCGcacAGCGGGCa---GCGGAGgGUGg -5'
10862 5' -61 NC_002794.1 + 143722 0.66 0.790024
Target:  5'- cCGGCGggcGUCGUCC-UCGCCcgccggacgCgCCGCCg -3'
miRNA:   3'- -GUCGCa--CAGCGGGcAGCGGa--------G-GGUGG- -5'
10862 5' -61 NC_002794.1 + 53420 0.66 0.781364
Target:  5'- aCAGCGgccCGCUCucgcUCGcCCUCCCGCUc -3'
miRNA:   3'- -GUCGCacaGCGGGc---AGC-GGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 117003 0.66 0.781364
Target:  5'- gCGGCGUcUCGCCCagGUaccaGCCgCgCCACCc -3'
miRNA:   3'- -GUCGCAcAGCGGG--CAg---CGGaG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 46507 0.66 0.781364
Target:  5'- -cGCGca-CGCCUGUaauagugugUGCCUCCCGCUc -3'
miRNA:   3'- guCGCacaGCGGGCA---------GCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 162047 0.66 0.781364
Target:  5'- gGGCGUGagcCGCaCCG-CGuaacaCCUCCCGCUu -3'
miRNA:   3'- gUCGCACa--GCG-GGCaGC-----GGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 184187 0.66 0.781364
Target:  5'- -cGCGg--CGCCCGgcgagGCCcgcUCCCGCCc -3'
miRNA:   3'- guCGCacaGCGGGCag---CGG---AGGGUGG- -5'
10862 5' -61 NC_002794.1 + 160238 0.66 0.772584
Target:  5'- --aCGUGccaUCGCCCgGUCGCCacgaccacuUCCgACCg -3'
miRNA:   3'- gucGCAC---AGCGGG-CAGCGG---------AGGgUGG- -5'
10862 5' -61 NC_002794.1 + 129003 0.66 0.772584
Target:  5'- uCGGCG-GUCGaCCCGcUCaCCgUCgCCGCCg -3'
miRNA:   3'- -GUCGCaCAGC-GGGC-AGcGG-AG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 114726 0.66 0.772584
Target:  5'- gCGGCGgcuccggguucGUCGagCCGgCGCCgCCCGCCg -3'
miRNA:   3'- -GUCGCa----------CAGCg-GGCaGCGGaGGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.