Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10862 | 5' | -61 | NC_002794.1 | + | 114726 | 0.66 | 0.772584 |
Target: 5'- gCGGCGgcuccggguucGUCGagCCGgCGCCgCCCGCCg -3' miRNA: 3'- -GUCGCa----------CAGCg-GGCaGCGGaGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 184187 | 0.66 | 0.781364 |
Target: 5'- -cGCGg--CGCCCGgcgagGCCcgcUCCCGCCc -3' miRNA: 3'- guCGCacaGCGGGCag---CGG---AGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 162047 | 0.66 | 0.781364 |
Target: 5'- gGGCGUGagcCGCaCCG-CGuaacaCCUCCCGCUu -3' miRNA: 3'- gUCGCACa--GCG-GGCaGC-----GGAGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 46507 | 0.66 | 0.781364 |
Target: 5'- -cGCGca-CGCCUGUaauagugugUGCCUCCCGCUc -3' miRNA: 3'- guCGCacaGCGGGCA---------GCGGAGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 117003 | 0.66 | 0.781364 |
Target: 5'- gCGGCGUcUCGCCCagGUaccaGCCgCgCCACCc -3' miRNA: 3'- -GUCGCAcAGCGGG--CAg---CGGaG-GGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 53420 | 0.66 | 0.781364 |
Target: 5'- aCAGCGgccCGCUCucgcUCGcCCUCCCGCUc -3' miRNA: 3'- -GUCGCacaGCGGGc---AGC-GGAGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 131386 | 0.66 | 0.772584 |
Target: 5'- uCGGCGccgCGCCCGUCaucacgGCCUCgC-CCg -3' miRNA: 3'- -GUCGCacaGCGGGCAG------CGGAGgGuGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 160238 | 0.66 | 0.772584 |
Target: 5'- --aCGUGccaUCGCCCgGUCGCCacgaccacuUCCgACCg -3' miRNA: 3'- gucGCAC---AGCGGG-CAGCGG---------AGGgUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 129003 | 0.66 | 0.772584 |
Target: 5'- uCGGCG-GUCGaCCCGcUCaCCgUCgCCGCCg -3' miRNA: 3'- -GUCGCaCAGC-GGGC-AGcGG-AG-GGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 285 | 0.66 | 0.790024 |
Target: 5'- aCGGCGgcccuggCGCgCCGaaCGCCgggCCCGCCc -3' miRNA: 3'- -GUCGCaca----GCG-GGCa-GCGGa--GGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 137132 | 0.66 | 0.790024 |
Target: 5'- ----cUGUCGUCCGUcCGCCcgCCCgGCCg -3' miRNA: 3'- gucgcACAGCGGGCA-GCGGa-GGG-UGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 124282 | 0.66 | 0.790024 |
Target: 5'- -cGCGc--CGUCCGUCGUCgCCCGCUu -3' miRNA: 3'- guCGCacaGCGGGCAGCGGaGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 138401 | 0.66 | 0.798558 |
Target: 5'- aGGCGUcgaGgUCGUCGCCggCCGCCg -3' miRNA: 3'- gUCGCAcagCgGGCAGCGGagGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 146357 | 0.66 | 0.798558 |
Target: 5'- gCGGCG-GcCGCCCGgguaGCCgUCCGCUc -3' miRNA: 3'- -GUCGCaCaGCGGGCag--CGGaGGGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 67891 | 0.66 | 0.798558 |
Target: 5'- gAGCGgacucccccUCGCCCGucUCGgCUCCCGgCu -3' miRNA: 3'- gUCGCac-------AGCGGGC--AGCgGAGGGUgG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 61758 | 0.66 | 0.798558 |
Target: 5'- aGGUGUG-CGaggggggguCCUcUCGCCUCCCgACCg -3' miRNA: 3'- gUCGCACaGC---------GGGcAGCGGAGGG-UGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 67835 | 0.66 | 0.798558 |
Target: 5'- cCGGCccgccGUCGCCCGgCGCCg-CCGCg -3' miRNA: 3'- -GUCGca---CAGCGGGCaGCGGagGGUGg -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 15091 | 0.66 | 0.798558 |
Target: 5'- aCAGCgGUGUUGCUCGaucccgacgCGCCggagaccgaCCGCCg -3' miRNA: 3'- -GUCG-CACAGCGGGCa--------GCGGag-------GGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 143722 | 0.66 | 0.790024 |
Target: 5'- cCGGCGggcGUCGUCC-UCGCCcgccggacgCgCCGCCg -3' miRNA: 3'- -GUCGCa--CAGCGGGcAGCGGa--------G-GGUGG- -5' |
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10862 | 5' | -61 | NC_002794.1 | + | 194259 | 0.66 | 0.790024 |
Target: 5'- aCAGC---UCGCCCGacgcCGCCUCgCACg -3' miRNA: 3'- -GUCGcacAGCGGGCa---GCGGAGgGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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