miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 36518 1.11 0.001089
Target:  5'- cCAGCGUGUCGCCCGUCGCCUCCCACCa -3'
miRNA:   3'- -GUCGCACAGCGGGCAGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 191518 0.83 0.094525
Target:  5'- cCAGCGccgggcGUCgGCCCG-CGCCUCCCGCCg -3'
miRNA:   3'- -GUCGCa-----CAG-CGGGCaGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 63503 0.82 0.112471
Target:  5'- gCGGCGUcGUCGUCCGcgaCGCCUCCCGCg -3'
miRNA:   3'- -GUCGCA-CAGCGGGCa--GCGGAGGGUGg -5'
10862 5' -61 NC_002794.1 + 67432 0.79 0.174143
Target:  5'- gCGGCGUGUCGCgCCGcuUCgGgCUCCCGCCc -3'
miRNA:   3'- -GUCGCACAGCG-GGC--AG-CgGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 185300 0.77 0.225351
Target:  5'- uCAGCaccacccgGUCGCCCcaguGUCGCCUCCaCACCc -3'
miRNA:   3'- -GUCGca------CAGCGGG----CAGCGGAGG-GUGG- -5'
10862 5' -61 NC_002794.1 + 84176 0.76 0.25835
Target:  5'- cCAGCGcucgGcccggCGCUCGgccCGCCUCCCACCa -3'
miRNA:   3'- -GUCGCa---Ca----GCGGGCa--GCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 137085 0.75 0.299749
Target:  5'- -cGCGccaUGUCGCCCGcUCGCgcuccuuccgcgacCUCCCGCCc -3'
miRNA:   3'- guCGC---ACAGCGGGC-AGCG--------------GAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 138924 0.75 0.308353
Target:  5'- gCGGCGgaugGUCuGCCgGUgCGCC-CCCACCg -3'
miRNA:   3'- -GUCGCa---CAG-CGGgCA-GCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 194031 0.75 0.315098
Target:  5'- cCGGCGccUCGCCCGcCGCCg-CCGCCg -3'
miRNA:   3'- -GUCGCacAGCGGGCaGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 124395 0.75 0.315098
Target:  5'- gCGGCGcGUCGCCgGUCGUCggggcgccgUCCGCCg -3'
miRNA:   3'- -GUCGCaCAGCGGgCAGCGGa--------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 59310 0.74 0.321955
Target:  5'- gCAGCGccacgGcgCGCCCGacuUCGCCgCCCGCCa -3'
miRNA:   3'- -GUCGCa----Ca-GCGGGC---AGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 186709 0.73 0.373039
Target:  5'- gGGCgGUGaagaGCCCGUCGCUgcuauagcugCCCACCg -3'
miRNA:   3'- gUCG-CACag--CGGGCAGCGGa---------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 12372 0.73 0.388612
Target:  5'- uCGGCGUGcUCGCCUGcCGCgCUCgCCugGCCg -3'
miRNA:   3'- -GUCGCAC-AGCGGGCaGCG-GAG-GG--UGG- -5'
10862 5' -61 NC_002794.1 + 70681 0.73 0.388612
Target:  5'- gCGGCgGUGaCGuCCUGUCGCCgcugggggUCCCACCc -3'
miRNA:   3'- -GUCG-CACaGC-GGGCAGCGG--------AGGGUGG- -5'
10862 5' -61 NC_002794.1 + 38499 0.73 0.388612
Target:  5'- gCGGCGg--CGCCgGUCGCCg-CCGCCu -3'
miRNA:   3'- -GUCGCacaGCGGgCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 127816 0.73 0.396557
Target:  5'- gAGCGag-CGCCCGUCGUCggCCCgaGCCg -3'
miRNA:   3'- gUCGCacaGCGGGCAGCGGa-GGG--UGG- -5'
10862 5' -61 NC_002794.1 + 131566 0.73 0.396557
Target:  5'- uCGGCGcGgCGCCCGucuugacggccUCGCCUCUCAUCg -3'
miRNA:   3'- -GUCGCaCaGCGGGC-----------AGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 18081 0.73 0.407854
Target:  5'- -uGCGUGUcgguggcgcagaaggCGCCCacCGCCUUCCACCu -3'
miRNA:   3'- guCGCACA---------------GCGGGcaGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 134274 0.72 0.41935
Target:  5'- gCGGCGUGguguacggauacgagCGCCUcuucgaucggcuguGUCGCCUCgCGCCg -3'
miRNA:   3'- -GUCGCACa--------------GCGGG--------------CAGCGGAGgGUGG- -5'
10862 5' -61 NC_002794.1 + 116681 0.72 0.421008
Target:  5'- gAGCGUGUCGaUCCGggagccgGCCUCCagCACCg -3'
miRNA:   3'- gUCGCACAGC-GGGCag-----CGGAGG--GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.