miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 116681 0.72 0.421008
Target:  5'- gAGCGUGUCGaUCCGggagccgGCCUCCagCACCg -3'
miRNA:   3'- gUCGCACAGC-GGGCag-----CGGAGG--GUGG- -5'
10862 5' -61 NC_002794.1 + 184697 0.72 0.429358
Target:  5'- cCGGCGgaggGUCGUCCGUCGgCUCUU-CCg -3'
miRNA:   3'- -GUCGCa---CAGCGGGCAGCgGAGGGuGG- -5'
10862 5' -61 NC_002794.1 + 105743 0.72 0.45498
Target:  5'- aAGCGUcGUCGCCguCGUCGCCgUUCAUCg -3'
miRNA:   3'- gUCGCA-CAGCGG--GCAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 133338 0.72 0.45498
Target:  5'- cCAGCGUcUCGUucaUCGUCGCCUCUUGCUu -3'
miRNA:   3'- -GUCGCAcAGCG---GGCAGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 63363 0.71 0.472513
Target:  5'- -cGCucccGUCGCCCG-CGCCgcugcCCCGCCg -3'
miRNA:   3'- guCGca--CAGCGGGCaGCGGa----GGGUGG- -5'
10862 5' -61 NC_002794.1 + 57873 0.71 0.481406
Target:  5'- gCGGCGcUGcacagcUGCCCGUCGCCUgCUACUu -3'
miRNA:   3'- -GUCGC-ACa-----GCGGGCAGCGGAgGGUGG- -5'
10862 5' -61 NC_002794.1 + 186096 0.71 0.481406
Target:  5'- gGGCGcuucGUCG-CCGUCGCCg-CCGCCg -3'
miRNA:   3'- gUCGCa---CAGCgGGCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 50808 0.71 0.499431
Target:  5'- cCGGCGUcGggCGCuCCGgCGCC-CCCGCCc -3'
miRNA:   3'- -GUCGCA-Ca-GCG-GGCaGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 114036 0.71 0.499431
Target:  5'- gCAGCG-GcCGCCCGuagUCGCCgCgCACCa -3'
miRNA:   3'- -GUCGCaCaGCGGGC---AGCGGaGgGUGG- -5'
10862 5' -61 NC_002794.1 + 185054 0.71 0.50764
Target:  5'- aCAGCGUgGUCugcagccgccgcgGCCCGUCGCCguagcaggCgUACCa -3'
miRNA:   3'- -GUCGCA-CAG-------------CGGGCAGCGGa-------GgGUGG- -5'
10862 5' -61 NC_002794.1 + 190646 0.71 0.508556
Target:  5'- cCGGCGUGU-GCaggaucaCGUCGCg-CCCGCCg -3'
miRNA:   3'- -GUCGCACAgCGg------GCAGCGgaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 113298 0.71 0.508556
Target:  5'- uCGGCGcagCGCUCGUcCGCUaCCCGCCg -3'
miRNA:   3'- -GUCGCacaGCGGGCA-GCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 19504 0.7 0.515905
Target:  5'- aCGGCGgagGUCGCgCCGcucggagCGCCggcgcggcgcggCCCGCCg -3'
miRNA:   3'- -GUCGCa--CAGCG-GGCa------GCGGa-----------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 63220 0.7 0.51775
Target:  5'- -cGCGaccUGcCGCCCcugCGCCUCCgCGCCg -3'
miRNA:   3'- guCGC---ACaGCGGGca-GCGGAGG-GUGG- -5'
10862 5' -61 NC_002794.1 + 153842 0.7 0.51775
Target:  5'- --cCGUG-CGCgCGUUGCCcCCCGCCg -3'
miRNA:   3'- gucGCACaGCGgGCAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 21973 0.7 0.545707
Target:  5'- gCGGCGccGUCGucuccgcgaCCCGUCGCCggcaagCCgGCCa -3'
miRNA:   3'- -GUCGCa-CAGC---------GGGCAGCGGa-----GGgUGG- -5'
10862 5' -61 NC_002794.1 + 8178 0.7 0.545707
Target:  5'- cCGGCGUccCGCCCG--GUUUCCCACCc -3'
miRNA:   3'- -GUCGCAcaGCGGGCagCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 72883 0.7 0.552303
Target:  5'- uCGGCcggGUCGCggcccuccucgccaCCGUCGCgCUCgCCGCCg -3'
miRNA:   3'- -GUCGca-CAGCG--------------GGCAGCG-GAG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 113260 0.7 0.555137
Target:  5'- gCAGCGcGUcCGCCCGcUCgGCCagcUCCCGCg -3'
miRNA:   3'- -GUCGCaCA-GCGGGC-AG-CGG---AGGGUGg -5'
10862 5' -61 NC_002794.1 + 190546 0.7 0.555137
Target:  5'- cCAGCGguccgCGUCCGUCGCCgacagCACCg -3'
miRNA:   3'- -GUCGCaca--GCGGGCAGCGGagg--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.