miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 114726 0.66 0.772584
Target:  5'- gCGGCGgcuccggguucGUCGagCCGgCGCCgCCCGCCg -3'
miRNA:   3'- -GUCGCa----------CAGCg-GGCaGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 129003 0.66 0.772584
Target:  5'- uCGGCG-GUCGaCCCGcUCaCCgUCgCCGCCg -3'
miRNA:   3'- -GUCGCaCAGC-GGGC-AGcGG-AG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 160238 0.66 0.772584
Target:  5'- --aCGUGccaUCGCCCgGUCGCCacgaccacuUCCgACCg -3'
miRNA:   3'- gucGCAC---AGCGGG-CAGCGG---------AGGgUGG- -5'
10862 5' -61 NC_002794.1 + 131386 0.66 0.772584
Target:  5'- uCGGCGccgCGCCCGUCaucacgGCCUCgC-CCg -3'
miRNA:   3'- -GUCGCacaGCGGGCAG------CGGAGgGuGG- -5'
10862 5' -61 NC_002794.1 + 118180 0.66 0.7717
Target:  5'- gCGGCGacgCGCcgaccuuCCGUCGCCg-CCGCCg -3'
miRNA:   3'- -GUCGCacaGCG-------GGCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 65715 0.66 0.763694
Target:  5'- uGGCGguucaUCGCCagcaGUUGCCgUCCgGCCu -3'
miRNA:   3'- gUCGCac---AGCGGg---CAGCGG-AGGgUGG- -5'
10862 5' -61 NC_002794.1 + 66702 0.66 0.763694
Target:  5'- aAGCGUacgccgCGCCCGgcacggcCGCCg-CCACCg -3'
miRNA:   3'- gUCGCAca----GCGGGCa------GCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 41192 0.66 0.763694
Target:  5'- gAGCGUcGUCGUCaCGgCGCugCUgCCACCg -3'
miRNA:   3'- gUCGCA-CAGCGG-GCaGCG--GAgGGUGG- -5'
10862 5' -61 NC_002794.1 + 81988 0.66 0.763694
Target:  5'- -cGCGaccGUUGCCCGUCGaCgacgCCgGCCg -3'
miRNA:   3'- guCGCa--CAGCGGGCAGCgGa---GGgUGG- -5'
10862 5' -61 NC_002794.1 + 44019 0.66 0.763694
Target:  5'- cCGGCGUc-CGCagaCCGUCGCUcUCCGCCc -3'
miRNA:   3'- -GUCGCAcaGCG---GGCAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 23474 0.66 0.762799
Target:  5'- gGGCGgaggggucugccaUGaUCGCgCCGcCGUCUCCCgGCCa -3'
miRNA:   3'- gUCGC-------------AC-AGCG-GGCaGCGGAGGG-UGG- -5'
10862 5' -61 NC_002794.1 + 68925 0.66 0.754699
Target:  5'- gCGGCGUccucGUCGCCCGcgggccgcggCGCCggcgccucUCCCuCCu -3'
miRNA:   3'- -GUCGCA----CAGCGGGCa---------GCGG--------AGGGuGG- -5'
10862 5' -61 NC_002794.1 + 181597 0.66 0.754699
Target:  5'- -cGCGaccggGUCGcCCCGUUGCCgcaUCUCGCa -3'
miRNA:   3'- guCGCa----CAGC-GGGCAGCGG---AGGGUGg -5'
10862 5' -61 NC_002794.1 + 144891 0.66 0.754699
Target:  5'- gGGCGaGaCGCUCG-CGCCgcugggcCCCGCCg -3'
miRNA:   3'- gUCGCaCaGCGGGCaGCGGa------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 13144 0.66 0.754699
Target:  5'- -cGCGgGUCGUcgCCGUCccauGCCgcacaCCCACCa -3'
miRNA:   3'- guCGCaCAGCG--GGCAG----CGGa----GGGUGG- -5'
10862 5' -61 NC_002794.1 + 14949 0.66 0.754699
Target:  5'- uCGGC---UCGCCCGcCGCCUCgaaGCCg -3'
miRNA:   3'- -GUCGcacAGCGGGCaGCGGAGgg-UGG- -5'
10862 5' -61 NC_002794.1 + 192300 0.66 0.754699
Target:  5'- cCAGCuucgCGCUCGUcCGCgCUCgCCGCCg -3'
miRNA:   3'- -GUCGcacaGCGGGCA-GCG-GAG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 194068 0.67 0.745608
Target:  5'- gAGCGc--CGCCuuCGUCGCCg-CCACCg -3'
miRNA:   3'- gUCGCacaGCGG--GCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 89883 0.67 0.745608
Target:  5'- uGGCGaaccGUCGacgaCGUCGCCUUUCAUCg -3'
miRNA:   3'- gUCGCa---CAGCgg--GCAGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 90751 0.67 0.745608
Target:  5'- cCGGUc-GUCGUCCGUgGCCaUCgCGCCg -3'
miRNA:   3'- -GUCGcaCAGCGGGCAgCGG-AGgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.