miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 90751 0.67 0.745608
Target:  5'- cCGGUc-GUCGUCCGUgGCCaUCgCGCCg -3'
miRNA:   3'- -GUCGcaCAGCGGGCAgCGG-AGgGUGG- -5'
10862 5' -61 NC_002794.1 + 89883 0.67 0.745608
Target:  5'- uGGCGaaccGUCGacgaCGUCGCCUUUCAUCg -3'
miRNA:   3'- gUCGCa---CAGCgg--GCAGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 194068 0.67 0.745608
Target:  5'- gAGCGc--CGCCuuCGUCGCCg-CCACCg -3'
miRNA:   3'- gUCGCacaGCGG--GCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 190461 0.67 0.745608
Target:  5'- gCGGCGUcgCGCCCGaCGCCcacgggugcCCCACg -3'
miRNA:   3'- -GUCGCAcaGCGGGCaGCGGa--------GGGUGg -5'
10862 5' -61 NC_002794.1 + 13346 0.67 0.736429
Target:  5'- gGGgGUGgcggCGCCCcUCGCCcgggCCCuCCu -3'
miRNA:   3'- gUCgCACa---GCGGGcAGCGGa---GGGuGG- -5'
10862 5' -61 NC_002794.1 + 131636 0.67 0.736429
Target:  5'- gAGCGUcGUcgCGCCCGUucucaacgcucUGCCUgugaCCGCCg -3'
miRNA:   3'- gUCGCA-CA--GCGGGCA-----------GCGGAg---GGUGG- -5'
10862 5' -61 NC_002794.1 + 32661 0.67 0.736429
Target:  5'- aCGGCGccGUC-CCCGUCGUCcgCCaACCg -3'
miRNA:   3'- -GUCGCa-CAGcGGGCAGCGGa-GGgUGG- -5'
10862 5' -61 NC_002794.1 + 52903 0.67 0.736429
Target:  5'- gCGGCGccGcCG-CCGUCGCCg-CCGCCg -3'
miRNA:   3'- -GUCGCa-CaGCgGGCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 115194 0.67 0.736429
Target:  5'- cCGGCG-GUCGagCCGgcguagCGCCU-CCGCCu -3'
miRNA:   3'- -GUCGCaCAGCg-GGCa-----GCGGAgGGUGG- -5'
10862 5' -61 NC_002794.1 + 129470 0.67 0.730882
Target:  5'- cCAGCGgucgggcaguuUGUCGCCCGaauccgguuuccgugUCGCCg-CCGCg -3'
miRNA:   3'- -GUCGC-----------ACAGCGGGC---------------AGCGGagGGUGg -5'
10862 5' -61 NC_002794.1 + 56525 0.67 0.730882
Target:  5'- cCGGCGcucguuccgGUCGCcauccggagcgcucgCCGcCGCC-CCCGCCg -3'
miRNA:   3'- -GUCGCa--------CAGCG---------------GGCaGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 63937 0.67 0.727169
Target:  5'- cCGGCGaGUCucgaGUCCGaCGCCUCgCCGCg -3'
miRNA:   3'- -GUCGCaCAG----CGGGCaGCGGAG-GGUGg -5'
10862 5' -61 NC_002794.1 + 154326 0.67 0.727169
Target:  5'- gCGGCGUcgGUCGuCCCGggUGCCgcggccgagcUCCCGCg -3'
miRNA:   3'- -GUCGCA--CAGC-GGGCa-GCGG----------AGGGUGg -5'
10862 5' -61 NC_002794.1 + 191187 0.67 0.727169
Target:  5'- -cGCGc-UCGCCCGgcCGCCcgCCCGCUc -3'
miRNA:   3'- guCGCacAGCGGGCa-GCGGa-GGGUGG- -5'
10862 5' -61 NC_002794.1 + 48596 0.67 0.727169
Target:  5'- gCGGCGcGUCGCCgucggCGUCGgCCUCagaCGCg -3'
miRNA:   3'- -GUCGCaCAGCGG-----GCAGC-GGAGg--GUGg -5'
10862 5' -61 NC_002794.1 + 487 0.67 0.726239
Target:  5'- uGGCGUuuagcccGUCGCCuggguggggCGUUGCCUccgguucuggCCCGCCc -3'
miRNA:   3'- gUCGCA-------CAGCGG---------GCAGCGGA----------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 53902 0.67 0.717836
Target:  5'- cCGGCGgcGUC-CUCGUCGCCgucggcggCgCCGCCg -3'
miRNA:   3'- -GUCGCa-CAGcGGGCAGCGGa-------G-GGUGG- -5'
10862 5' -61 NC_002794.1 + 11119 0.67 0.717836
Target:  5'- aCGGCGUGcugCGCCaa-CGCCaCCCGCa -3'
miRNA:   3'- -GUCGCACa--GCGGgcaGCGGaGGGUGg -5'
10862 5' -61 NC_002794.1 + 34939 0.67 0.709381
Target:  5'- cCGGC-UGUC-CCCGgcccgccgcgacccgCGCCUCCCGuCCc -3'
miRNA:   3'- -GUCGcACAGcGGGCa--------------GCGGAGGGU-GG- -5'
10862 5' -61 NC_002794.1 + 106947 0.67 0.708438
Target:  5'- cCGGCGg--CGCCuggagacacgCGUCGCCUCgCGCg -3'
miRNA:   3'- -GUCGCacaGCGG----------GCAGCGGAGgGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.