miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 285 0.66 0.790024
Target:  5'- aCGGCGgcccuggCGCgCCGaaCGCCgggCCCGCCc -3'
miRNA:   3'- -GUCGCaca----GCG-GGCa-GCGGa--GGGUGG- -5'
10862 5' -61 NC_002794.1 + 487 0.67 0.726239
Target:  5'- uGGCGUuuagcccGUCGCCuggguggggCGUUGCCUccgguucuggCCCGCCc -3'
miRNA:   3'- gUCGCA-------CAGCGG---------GCAGCGGA----------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 627 0.68 0.679929
Target:  5'- cCGGUGUGgcguUCGCCUccCGUC-CCCGCCg -3'
miRNA:   3'- -GUCGCAC----AGCGGGcaGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 8178 0.7 0.545707
Target:  5'- cCGGCGUccCGCCCG--GUUUCCCACCc -3'
miRNA:   3'- -GUCGCAcaGCGGGCagCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 11119 0.67 0.717836
Target:  5'- aCGGCGUGcugCGCCaa-CGCCaCCCGCa -3'
miRNA:   3'- -GUCGCACa--GCGGgcaGCGGaGGGUGg -5'
10862 5' -61 NC_002794.1 + 12155 0.67 0.745608
Target:  5'- gAGCGgccgaUCGCCCGgaUCGUCg-CCGCCg -3'
miRNA:   3'- gUCGCac---AGCGGGC--AGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 12372 0.73 0.388612
Target:  5'- uCGGCGUGcUCGCCUGcCGCgCUCgCCugGCCg -3'
miRNA:   3'- -GUCGCAC-AGCGGGCaGCG-GAG-GG--UGG- -5'
10862 5' -61 NC_002794.1 + 13144 0.66 0.754699
Target:  5'- -cGCGgGUCGUcgCCGUCccauGCCgcacaCCCACCa -3'
miRNA:   3'- guCGCaCAGCG--GGCAG----CGGa----GGGUGG- -5'
10862 5' -61 NC_002794.1 + 13346 0.67 0.736429
Target:  5'- gGGgGUGgcggCGCCCcUCGCCcgggCCCuCCu -3'
miRNA:   3'- gUCgCACa---GCGGGcAGCGGa---GGGuGG- -5'
10862 5' -61 NC_002794.1 + 14195 0.67 0.698982
Target:  5'- uCAGCGUcccggcccgcugGcCGCCCcaaCGCCaCCCGCCg -3'
miRNA:   3'- -GUCGCA------------CaGCGGGca-GCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 14949 0.66 0.754699
Target:  5'- uCGGC---UCGCCCGcCGCCUCgaaGCCg -3'
miRNA:   3'- -GUCGcacAGCGGGCaGCGGAGgg-UGG- -5'
10862 5' -61 NC_002794.1 + 15091 0.66 0.798558
Target:  5'- aCAGCgGUGUUGCUCGaucccgacgCGCCggagaccgaCCGCCg -3'
miRNA:   3'- -GUCG-CACAGCGGGCa--------GCGGag-------GGUGG- -5'
10862 5' -61 NC_002794.1 + 17146 0.69 0.583687
Target:  5'- aCGGCGguagCGCCCGUgaCGCUcuacuuUUCCACCg -3'
miRNA:   3'- -GUCGCaca-GCGGGCA--GCGG------AGGGUGG- -5'
10862 5' -61 NC_002794.1 + 18081 0.73 0.407854
Target:  5'- -uGCGUGUcgguggcgcagaaggCGCCCacCGCCUUCCACCu -3'
miRNA:   3'- guCGCACA---------------GCGGGcaGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 19469 0.69 0.593273
Target:  5'- gCGGCGgcgGgaccCGCCgGUCGCC-CgCACCg -3'
miRNA:   3'- -GUCGCa--Ca---GCGGgCAGCGGaGgGUGG- -5'
10862 5' -61 NC_002794.1 + 19504 0.7 0.515905
Target:  5'- aCGGCGgagGUCGCgCCGcucggagCGCCggcgcggcgcggCCCGCCg -3'
miRNA:   3'- -GUCGCa--CAGCG-GGCa------GCGGa-----------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 21674 0.68 0.641461
Target:  5'- gCGGCGguauUCGCCCGcucCGgCUCcCCGCCu -3'
miRNA:   3'- -GUCGCac--AGCGGGCa--GCgGAG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 21973 0.7 0.545707
Target:  5'- gCGGCGccGUCGucuccgcgaCCCGUCGCCggcaagCCgGCCa -3'
miRNA:   3'- -GUCGCa-CAGC---------GGGCAGCGGa-----GGgUGG- -5'
10862 5' -61 NC_002794.1 + 22670 0.66 0.798558
Target:  5'- aAGCGcgGUCGCU--UCGCUUCCCGg- -3'
miRNA:   3'- gUCGCa-CAGCGGgcAGCGGAGGGUgg -5'
10862 5' -61 NC_002794.1 + 23474 0.66 0.762799
Target:  5'- gGGCGgaggggucugccaUGaUCGCgCCGcCGUCUCCCgGCCa -3'
miRNA:   3'- gUCGC-------------AC-AGCG-GGCaGCGGAGGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.