miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 30993 0.68 0.641461
Target:  5'- aCGGCGgggucuUCGCCggaCGUCGCCg-CCGCCu -3'
miRNA:   3'- -GUCGCac----AGCGG---GCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 31392 0.7 0.564613
Target:  5'- uCGGCGgccccgccgCGCCCGcCGCg-CCCGCCg -3'
miRNA:   3'- -GUCGCaca------GCGGGCaGCGgaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 32661 0.67 0.736429
Target:  5'- aCGGCGccGUC-CCCGUCGUCcgCCaACCg -3'
miRNA:   3'- -GUCGCa-CAGcGGGCAGCGGa-GGgUGG- -5'
10862 5' -61 NC_002794.1 + 34939 0.67 0.709381
Target:  5'- cCGGC-UGUC-CCCGgcccgccgcgacccgCGCCUCCCGuCCc -3'
miRNA:   3'- -GUCGcACAGcGGGCa--------------GCGGAGGGU-GG- -5'
10862 5' -61 NC_002794.1 + 35771 0.69 0.593273
Target:  5'- -cGCGgcaccGUCGCCggCGUCGUCUCCgGCg -3'
miRNA:   3'- guCGCa----CAGCGG--GCAGCGGAGGgUGg -5'
10862 5' -61 NC_002794.1 + 36518 1.11 0.001089
Target:  5'- cCAGCGUGUCGCCCGUCGCCUCCCACCa -3'
miRNA:   3'- -GUCGCACAGCGGGCAGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 37042 0.7 0.574132
Target:  5'- uCAGgGUGUCcuGCCCGUCGCg-CUCGuCCu -3'
miRNA:   3'- -GUCgCACAG--CGGGCAGCGgaGGGU-GG- -5'
10862 5' -61 NC_002794.1 + 38499 0.73 0.388612
Target:  5'- gCGGCGg--CGCCgGUCGCCg-CCGCCu -3'
miRNA:   3'- -GUCGCacaGCGGgCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 38525 0.69 0.63181
Target:  5'- -cGCGaucccagGUCGCcgccgCCGcCGCCUCcCCGCCa -3'
miRNA:   3'- guCGCa------CAGCG-----GGCaGCGGAG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 41192 0.66 0.763694
Target:  5'- gAGCGUcGUCGUCaCGgCGCugCUgCCACCg -3'
miRNA:   3'- gUCGCA-CAGCGG-GCaGCG--GAgGGUGG- -5'
10862 5' -61 NC_002794.1 + 41954 0.67 0.698982
Target:  5'- uCGGCGUGcgCgGCCUggaagGUCGgCUCCaCGCCg -3'
miRNA:   3'- -GUCGCACa-G-CGGG-----CAGCgGAGG-GUGG- -5'
10862 5' -61 NC_002794.1 + 44019 0.66 0.763694
Target:  5'- cCGGCGUc-CGCagaCCGUCGCUcUCCGCCc -3'
miRNA:   3'- -GUCGCAcaGCG---GGCAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 46507 0.66 0.781364
Target:  5'- -cGCGca-CGCCUGUaauagugugUGCCUCCCGCUc -3'
miRNA:   3'- guCGCacaGCGGGCA---------GCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 48596 0.67 0.727169
Target:  5'- gCGGCGcGUCGCCgucggCGUCGgCCUCagaCGCg -3'
miRNA:   3'- -GUCGCaCAGCGG-----GCAGC-GGAGg--GUGg -5'
10862 5' -61 NC_002794.1 + 49437 0.68 0.679929
Target:  5'- aCGGCGUccggCGCggUCGUCGCCguggCgCCGCCg -3'
miRNA:   3'- -GUCGCAca--GCG--GGCAGCGGa---G-GGUGG- -5'
10862 5' -61 NC_002794.1 + 49487 0.69 0.622159
Target:  5'- gGGUcUGUCGaCCuCGUCGCCgucgucgCUCGCCg -3'
miRNA:   3'- gUCGcACAGC-GG-GCAGCGGa------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 49611 0.69 0.593273
Target:  5'- aCGGCGgg-CGCCgGcggCGCCUcgCCCGCCc -3'
miRNA:   3'- -GUCGCacaGCGGgCa--GCGGA--GGGUGG- -5'
10862 5' -61 NC_002794.1 + 50808 0.71 0.499431
Target:  5'- cCGGCGUcGggCGCuCCGgCGCC-CCCGCCc -3'
miRNA:   3'- -GUCGCA-Ca-GCG-GGCaGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 51083 0.69 0.599038
Target:  5'- gAGCGUGgcgCGCUCGgaaaagacgaccgCGCCUCgCGCUc -3'
miRNA:   3'- gUCGCACa--GCGGGCa------------GCGGAGgGUGG- -5'
10862 5' -61 NC_002794.1 + 52903 0.67 0.736429
Target:  5'- gCGGCGccGcCG-CCGUCGCCg-CCGCCg -3'
miRNA:   3'- -GUCGCa-CaGCgGGCAGCGGagGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.