miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10862 5' -61 NC_002794.1 + 194259 0.66 0.790024
Target:  5'- aCAGC---UCGCCCGacgcCGCCUCgCACg -3'
miRNA:   3'- -GUCGcacAGCGGGCa---GCGGAGgGUGg -5'
10862 5' -61 NC_002794.1 + 194068 0.67 0.745608
Target:  5'- gAGCGc--CGCCuuCGUCGCCg-CCACCg -3'
miRNA:   3'- gUCGCacaGCGG--GCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 194031 0.75 0.315098
Target:  5'- cCGGCGccUCGCCCGcCGCCg-CCGCCg -3'
miRNA:   3'- -GUCGCacAGCGGGCaGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 193282 0.72 0.421008
Target:  5'- gCGGCGUG-CGCCgguaGUCGCCgUCCGCUc -3'
miRNA:   3'- -GUCGCACaGCGGg---CAGCGGaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 192300 0.66 0.754699
Target:  5'- cCAGCuucgCGCUCGUcCGCgCUCgCCGCCg -3'
miRNA:   3'- -GUCGcacaGCGGGCA-GCG-GAG-GGUGG- -5'
10862 5' -61 NC_002794.1 + 191687 0.67 0.708438
Target:  5'- gCGGCGUGcC-CUCGUCGCggaCCACCu -3'
miRNA:   3'- -GUCGCACaGcGGGCAGCGgagGGUGG- -5'
10862 5' -61 NC_002794.1 + 191518 0.83 0.094525
Target:  5'- cCAGCGccgggcGUCgGCCCG-CGCCUCCCGCCg -3'
miRNA:   3'- -GUCGCa-----CAG-CGGGCaGCGGAGGGUGG- -5'
10862 5' -61 NC_002794.1 + 191187 0.67 0.727169
Target:  5'- -cGCGc-UCGCCCGgcCGCCcgCCCGCUc -3'
miRNA:   3'- guCGCacAGCGGGCa-GCGGa-GGGUGG- -5'
10862 5' -61 NC_002794.1 + 190646 0.71 0.508556
Target:  5'- cCGGCGUGU-GCaggaucaCGUCGCg-CCCGCCg -3'
miRNA:   3'- -GUCGCACAgCGg------GCAGCGgaGGGUGG- -5'
10862 5' -61 NC_002794.1 + 190546 0.7 0.555137
Target:  5'- cCAGCGguccgCGUCCGUCGCCgacagCACCg -3'
miRNA:   3'- -GUCGCaca--GCGGGCAGCGGagg--GUGG- -5'
10862 5' -61 NC_002794.1 + 190461 0.67 0.745608
Target:  5'- gCGGCGUcgCGCCCGaCGCCcacgggugcCCCACg -3'
miRNA:   3'- -GUCGCAcaGCGGGCaGCGGa--------GGGUGg -5'
10862 5' -61 NC_002794.1 + 189866 0.68 0.689477
Target:  5'- uCGGCGUcGUCGCCgccgacCGgccCGCUcgggCCCGCCg -3'
miRNA:   3'- -GUCGCA-CAGCGG------GCa--GCGGa---GGGUGG- -5'
10862 5' -61 NC_002794.1 + 189590 0.68 0.660736
Target:  5'- cCGGCGccccuuaGCCCGUcCGCCcgagaCCCGCCg -3'
miRNA:   3'- -GUCGCacag---CGGGCA-GCGGa----GGGUGG- -5'
10862 5' -61 NC_002794.1 + 188316 0.67 0.745608
Target:  5'- -cGuCGUcGUCGuCCuCGUCGCCg-CCGCCg -3'
miRNA:   3'- guC-GCA-CAGC-GG-GCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 187902 0.67 0.708438
Target:  5'- -cGCgGUGcCGCUCGccCGCCgggcCCCGCCg -3'
miRNA:   3'- guCG-CACaGCGGGCa-GCGGa---GGGUGG- -5'
10862 5' -61 NC_002794.1 + 186709 0.73 0.373039
Target:  5'- gGGCgGUGaagaGCCCGUCGCUgcuauagcugCCCACCg -3'
miRNA:   3'- gUCG-CACag--CGGGCAGCGGa---------GGGUGG- -5'
10862 5' -61 NC_002794.1 + 186096 0.71 0.481406
Target:  5'- gGGCGcuucGUCG-CCGUCGCCg-CCGCCg -3'
miRNA:   3'- gUCGCa---CAGCgGGCAGCGGagGGUGG- -5'
10862 5' -61 NC_002794.1 + 185300 0.77 0.225351
Target:  5'- uCAGCaccacccgGUCGCCCcaguGUCGCCUCCaCACCc -3'
miRNA:   3'- -GUCGca------CAGCGGG----CAGCGGAGG-GUGG- -5'
10862 5' -61 NC_002794.1 + 185054 0.71 0.50764
Target:  5'- aCAGCGUgGUCugcagccgccgcgGCCCGUCGCCguagcaggCgUACCa -3'
miRNA:   3'- -GUCGCA-CAG-------------CGGGCAGCGGa-------GgGUGG- -5'
10862 5' -61 NC_002794.1 + 184697 0.72 0.429358
Target:  5'- cCGGCGgaggGUCGUCCGUCGgCUCUU-CCg -3'
miRNA:   3'- -GUCGCa---CAGCGGGCAGCgGAGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.