miRNA display CGI


Results 1 - 20 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 181533 0.66 0.622262
Target:  5'- -cGcCCGCCGCCgGCGGGCCggcgcucucgguCgCCGgGCCa -3'
miRNA:   3'- ccC-GGCGGCGG-UGCUUGG------------G-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 10839 0.66 0.622262
Target:  5'- cGGcGCCcuGCuCGUCACGcucGACCCUCGgaaGCCg -3'
miRNA:   3'- -CC-CGG--CG-GCGGUGC---UUGGGGGCg--CGG- -5'
10864 3' -65.2 NC_002794.1 + 192732 0.66 0.622262
Target:  5'- aGGUCGUCgGCCAgcCGGuACaCCUCGCGCUc -3'
miRNA:   3'- cCCGGCGG-CGGU--GCU-UG-GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 18816 0.66 0.622262
Target:  5'- cGGGUCggcgaccucgGCCGgCGCGGaggagACCUCgagCGCGCCg -3'
miRNA:   3'- -CCCGG----------CGGCgGUGCU-----UGGGG---GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 54869 0.66 0.622262
Target:  5'- cGGGCCGCCGCaGCGucGCCuuagguugaugaCCCG-GUUg -3'
miRNA:   3'- -CCCGGCGGCGgUGCu-UGG------------GGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 131501 0.66 0.622262
Target:  5'- cGGGcCCGUCaUCACGAccucGCCCgugauCgGCGCCg -3'
miRNA:   3'- -CCC-GGCGGcGGUGCU----UGGG-----GgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 151740 0.66 0.622262
Target:  5'- cGGCCGCCGgucgccUCGCGcgcucguCCUcgagauggagaCCGCGCCg -3'
miRNA:   3'- cCCGGCGGC------GGUGCuu-----GGG-----------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 195189 0.66 0.622262
Target:  5'- cGGGCacagCGCCGUCAgGuccAgCCCCGCcaGCUg -3'
miRNA:   3'- -CCCG----GCGGCGGUgCu--UgGGGGCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 194839 0.66 0.622262
Target:  5'- cGGCCcggcgucuccaGCCGCaC-CGucUgCCCGCGCCg -3'
miRNA:   3'- cCCGG-----------CGGCG-GuGCuuGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 113262 0.66 0.622262
Target:  5'- -aGCgCGuCCGCCcgcuCGGccaGCUCCCGCGUCu -3'
miRNA:   3'- ccCG-GC-GGCGGu---GCU---UGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 147051 0.66 0.619457
Target:  5'- cGGCgGCCggucuaaggacggaGCCGCGGGCgCCCG-GUCc -3'
miRNA:   3'- cCCGgCGG--------------CGGUGCUUGgGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 145525 0.66 0.612916
Target:  5'- aGGCCgGCCcgagcGCCuCGGGCgCCCCGagcgGCCc -3'
miRNA:   3'- cCCGG-CGG-----CGGuGCUUG-GGGGCg---CGG- -5'
10864 3' -65.2 NC_002794.1 + 57538 0.66 0.612916
Target:  5'- aGGagaaCGCCGUCACG-GCCaUCGCGCa -3'
miRNA:   3'- cCCg---GCGGCGGUGCuUGGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 143504 0.66 0.612916
Target:  5'- gGGGCUGCagaugaggaaGCgCACGu-CgCCCGCGUCc -3'
miRNA:   3'- -CCCGGCGg---------CG-GUGCuuGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 116864 0.66 0.612916
Target:  5'- cGGCgGCCGUguCGCGcucgucaggggGGCgCCgGCGCCg -3'
miRNA:   3'- cCCGgCGGCG--GUGC-----------UUGgGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 93731 0.66 0.612916
Target:  5'- -cGCCGCucgCGCCGCGAGa--CCGUGCUc -3'
miRNA:   3'- ccCGGCG---GCGGUGCUUgggGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 62937 0.66 0.612916
Target:  5'- cGGCCGCUGCgu-GGGCuuCUUCGCGCCc -3'
miRNA:   3'- cCCGGCGGCGgugCUUG--GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 18253 0.66 0.612916
Target:  5'- cGGCCGaCCGgcgaCCGCGAGaugCgCgGCGCCg -3'
miRNA:   3'- cCCGGC-GGC----GGUGCUUg--GgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 194482 0.66 0.612916
Target:  5'- cGGCUccuccaGCCGCC-----CCUCCGCGCCc -3'
miRNA:   3'- cCCGG------CGGCGGugcuuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 127340 0.66 0.612916
Target:  5'- -cGCCGCUGCCGa-GACgCUCGCGgCg -3'
miRNA:   3'- ccCGGCGGCGGUgcUUGgGGGCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.