miRNA display CGI


Results 61 - 80 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 57538 0.66 0.612916
Target:  5'- aGGagaaCGCCGUCACG-GCCaUCGCGCa -3'
miRNA:   3'- cCCg---GCGGCGGUGCuUGGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 145525 0.66 0.612916
Target:  5'- aGGCCgGCCcgagcGCCuCGGGCgCCCCGagcgGCCc -3'
miRNA:   3'- cCCGG-CGG-----CGGuGCUUG-GGGGCg---CGG- -5'
10864 3' -65.2 NC_002794.1 + 52728 0.66 0.603583
Target:  5'- uGGuCUGCCGCaccccCAgGAACCguucguaguaCCGCGCCg -3'
miRNA:   3'- cCC-GGCGGCG-----GUgCUUGGg---------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 49021 0.66 0.603583
Target:  5'- cGGCgGCCGCgGCGucgUCCgGCGCg -3'
miRNA:   3'- cCCGgCGGCGgUGCuugGGGgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 184058 0.66 0.60265
Target:  5'- cGGGCCGCgGCgaagcggCACGcGCCCaCgGUGUa -3'
miRNA:   3'- -CCCGGCGgCG-------GUGCuUGGG-GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 33039 0.66 0.603583
Target:  5'- cGGaGCCGaCGCCAuCGAcgugcuguUCCCCaCGCCg -3'
miRNA:   3'- -CC-CGGCgGCGGU-GCUu-------GGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 22997 0.66 0.60265
Target:  5'- cGGGCaaaCGCCGCCGgucuucgUGAGguccgUCCCCG-GCCc -3'
miRNA:   3'- -CCCG---GCGGCGGU-------GCUU-----GGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 17681 0.66 0.600786
Target:  5'- cGGCCccggcggagaccgaGCCGCaCACGcaguacAUCCCCaCGCCg -3'
miRNA:   3'- cCCGG--------------CGGCG-GUGCu-----UGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 150801 0.66 0.594267
Target:  5'- aGGCC-CCGCgGCGGACggCCGaGCCg -3'
miRNA:   3'- cCCGGcGGCGgUGCUUGggGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 195555 0.66 0.594267
Target:  5'- -cGCCcugaGCCGCCcCGAGCCgCCC-CGaCCg -3'
miRNA:   3'- ccCGG----CGGCGGuGCUUGG-GGGcGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 135463 0.66 0.603583
Target:  5'- gGGGcCCGCgGCCgACGAcgacGCCgCCgucgaCGCGCg -3'
miRNA:   3'- -CCC-GGCGgCGG-UGCU----UGG-GG-----GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 67736 0.66 0.603583
Target:  5'- cGGCgGCgGCCAccCGAGCCCggaucacggcUCGCGgCa -3'
miRNA:   3'- cCCGgCGgCGGU--GCUUGGG----------GGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 9124 0.66 0.612916
Target:  5'- aGGCCGg-GCgACGAACCgCgCGCGCg -3'
miRNA:   3'- cCCGGCggCGgUGCUUGGgG-GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 81416 0.66 0.612916
Target:  5'- gGGaGCUGCuCGCC-CGGcuucgagaccGCgCCUGUGCCg -3'
miRNA:   3'- -CC-CGGCG-GCGGuGCU----------UGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 141575 0.66 0.603583
Target:  5'- cGGCCuCCGUgauCAUG-ACgCCCGCGUCg -3'
miRNA:   3'- cCCGGcGGCG---GUGCuUGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 142997 0.66 0.603583
Target:  5'- -cGCCGUgGCCAgGAACCCggucagCGUGCg -3'
miRNA:   3'- ccCGGCGgCGGUgCUUGGGg-----GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 145727 0.66 0.610115
Target:  5'- cGGGCgcuggaggcggcggCGCCGgCAuCGAcggcgACCCCgagcgaGCGCCa -3'
miRNA:   3'- -CCCG--------------GCGGCgGU-GCU-----UGGGGg-----CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 180664 0.66 0.611982
Target:  5'- aGGGCgugccggggaacuCGCCgGCCGC---UCCCgGCGCCc -3'
miRNA:   3'- -CCCG-------------GCGG-CGGUGcuuGGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 79700 0.66 0.603583
Target:  5'- cGGGCCGCCGCU-CGuguccuACaUCUCGCuGCUc -3'
miRNA:   3'- -CCCGGCGGCGGuGCu-----UG-GGGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 189867 0.66 0.603583
Target:  5'- cGGcGUCGUCGCCGCcGACCggCCCGCu-- -3'
miRNA:   3'- -CC-CGGCGGCGGUGcUUGG--GGGCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.