miRNA display CGI


Results 81 - 100 of 594 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 22997 0.66 0.60265
Target:  5'- cGGGCaaaCGCCGCCGgucuucgUGAGguccgUCCCCG-GCCc -3'
miRNA:   3'- -CCCG---GCGGCGGU-------GCUU-----GGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 33039 0.66 0.603583
Target:  5'- cGGaGCCGaCGCCAuCGAcgugcuguUCCCCaCGCCg -3'
miRNA:   3'- -CC-CGGCgGCGGU-GCUu-------GGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 142997 0.66 0.603583
Target:  5'- -cGCCGUgGCCAgGAACCCggucagCGUGCg -3'
miRNA:   3'- ccCGGCGgCGGUgCUUGGGg-----GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 145727 0.66 0.610115
Target:  5'- cGGGCgcuggaggcggcggCGCCGgCAuCGAcggcgACCCCgagcgaGCGCCa -3'
miRNA:   3'- -CCCG--------------GCGGCgGU-GCU-----UGGGGg-----CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 180664 0.66 0.611982
Target:  5'- aGGGCgugccggggaacuCGCCgGCCGC---UCCCgGCGCCc -3'
miRNA:   3'- -CCCG-------------GCGG-CGGUGcuuGGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 79700 0.66 0.603583
Target:  5'- cGGGCCGCCGCU-CGuguccuACaUCUCGCuGCUc -3'
miRNA:   3'- -CCCGGCGGCGGuGCu-----UG-GGGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 189867 0.66 0.603583
Target:  5'- cGGcGUCGUCGCCGCcGACCggCCCGCu-- -3'
miRNA:   3'- -CC-CGGCGGCGGUGcUUGG--GGGCGcgg -5'
10864 3' -65.2 NC_002794.1 + 67736 0.66 0.603583
Target:  5'- cGGCgGCgGCCAccCGAGCCCggaucacggcUCGCGgCa -3'
miRNA:   3'- cCCGgCGgCGGU--GCUUGGG----------GGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 135463 0.66 0.603583
Target:  5'- gGGGcCCGCgGCCgACGAcgacGCCgCCgucgaCGCGCg -3'
miRNA:   3'- -CCC-GGCGgCGG-UGCU----UGG-GG-----GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 52728 0.66 0.603583
Target:  5'- uGGuCUGCCGCaccccCAgGAACCguucguaguaCCGCGCCg -3'
miRNA:   3'- cCC-GGCGGCG-----GUgCUUGGg---------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 49021 0.66 0.603583
Target:  5'- cGGCgGCCGCgGCGucgUCCgGCGCg -3'
miRNA:   3'- cCCGgCGGCGgUGCuugGGGgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 184058 0.66 0.60265
Target:  5'- cGGGCCGCgGCgaagcggCACGcGCCCaCgGUGUa -3'
miRNA:   3'- -CCCGGCGgCG-------GUGCuUGGG-GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 14165 0.67 0.566479
Target:  5'- --cCCGCCGCC-UGAACCU--GCGCCu -3'
miRNA:   3'- cccGGCGGCGGuGCUUGGGggCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 185410 0.67 0.566479
Target:  5'- cGGGcCCGaCCGCCGuCGAcucgaCgCgGCGCCa -3'
miRNA:   3'- -CCC-GGC-GGCGGU-GCUug---GgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 148444 0.67 0.566479
Target:  5'- uGGCUGgCGCUcuACuGGCCUCCGCGgCa -3'
miRNA:   3'- cCCGGCgGCGG--UGcUUGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 131254 0.67 0.566479
Target:  5'- cGGaCGCCGCCGgcaccaccgcCGGcaccACCgCCgGCGCCg -3'
miRNA:   3'- cCCgGCGGCGGU----------GCU----UGG-GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 52775 0.67 0.566479
Target:  5'- cGGGCCGCgggaucgugaCGCU-CGAGCCgCUCGUcggacGCCg -3'
miRNA:   3'- -CCCGGCG----------GCGGuGCUUGG-GGGCG-----CGG- -5'
10864 3' -65.2 NC_002794.1 + 22874 0.67 0.566479
Target:  5'- cGGCCGUCG-CGCGcuUCCCUG-GCCu -3'
miRNA:   3'- cCCGGCGGCgGUGCuuGGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 184457 0.67 0.566479
Target:  5'- -cGCUGCCGcCCGCGGGCCgcgcgaaCgGCGCg -3'
miRNA:   3'- ccCGGCGGC-GGUGCUUGGg------GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 187266 0.67 0.566479
Target:  5'- -uGCCGCuCGCgCGucuCGAACa-CCGCGCCg -3'
miRNA:   3'- ccCGGCG-GCG-GU---GCUUGggGGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.