miRNA display CGI


Results 21 - 40 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 80432 0.79 0.100869
Target:  5'- gGGGCCGCCGCCgGCGGccGCCggcccgucggcggCCCGCuGCCc -3'
miRNA:   3'- -CCCGGCGGCGG-UGCU--UGG-------------GGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 31396 0.79 0.103577
Target:  5'- cGGCC-CCGCCGC--GCCCgCCGCGCCc -3'
miRNA:   3'- cCCGGcGGCGGUGcuUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 59222 0.78 0.114008
Target:  5'- cGGCCGCgGCgCGCGAGCuCUUCGCGCUg -3'
miRNA:   3'- cCCGGCGgCG-GUGCUUG-GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 67317 0.78 0.114008
Target:  5'- cGGGUCGCgcccguacauCGCCAgGGugCCCCGgCGCCg -3'
miRNA:   3'- -CCCGGCG----------GCGGUgCUugGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 183650 0.78 0.122467
Target:  5'- aGGGCCGCCuucuCCGCGccgGGCCCgaGCGCCg -3'
miRNA:   3'- -CCCGGCGGc---GGUGC---UUGGGggCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 41674 0.78 0.114008
Target:  5'- cGGGCCGCCG-CAgGAGCgCCCGgacCGCCg -3'
miRNA:   3'- -CCCGGCGGCgGUgCUUGgGGGC---GCGG- -5'
10864 3' -65.2 NC_002794.1 + 144911 0.78 0.125414
Target:  5'- uGGGCC-CCGCCGCcGGCaCCaaCCGCGCCa -3'
miRNA:   3'- -CCCGGcGGCGGUGcUUG-GG--GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 103945 0.78 0.114008
Target:  5'- uGGCCGCCGCCGCucgccAGCCgCCgGCGCUu -3'
miRNA:   3'- cCCGGCGGCGGUGc----UUGG-GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 61565 0.78 0.125414
Target:  5'- cGGCgGCCGCCGuCGAacaccuagACCCCCGCGaCg -3'
miRNA:   3'- cCCGgCGGCGGU-GCU--------UGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 85963 0.78 0.111311
Target:  5'- gGGGCCGCgGCCcucucauCGGACCgCCGCgGCCc -3'
miRNA:   3'- -CCCGGCGgCGGu------GCUUGGgGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 71749 0.78 0.1193
Target:  5'- aGGCCGCCGCCGgcucuucCG-ACCggUCCGCGCCg -3'
miRNA:   3'- cCCGGCGGCGGU-------GCuUGG--GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 130661 0.78 0.125414
Target:  5'- -cGCCGCCgGCCGCGGGCuCCgCCGCgGCCu -3'
miRNA:   3'- ccCGGCGG-CGGUGCUUG-GG-GGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 58424 0.78 0.119585
Target:  5'- cGGCCGCCGCCAgacgcCGAGgCCacgCUGCGCCu -3'
miRNA:   3'- cCCGGCGGCGGU-----GCUUgGG---GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 20216 0.78 0.111311
Target:  5'- -cGCCGaCCGCCAUGGcUCUCCGCGCCu -3'
miRNA:   3'- ccCGGC-GGCGGUGCUuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 61533 0.78 0.108414
Target:  5'- cGGCgGCCGCCGCGAagacgacGCCgCCGCGgCg -3'
miRNA:   3'- cCCGgCGGCGGUGCU-------UGGgGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 13862 0.78 0.125414
Target:  5'- -cGCCGCCGCCGCGAcccgguuCUCCgaGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGCUu------GGGGg-CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 188334 0.77 0.131506
Target:  5'- -cGCCGCCGCCgGCGGcGCCgUCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGG-UGCU-UGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 154342 0.77 0.134654
Target:  5'- cGGG-UGCCGCgGcCGAGCUCCCGCGCg -3'
miRNA:   3'- -CCCgGCGGCGgU-GCUUGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 194143 0.77 0.128427
Target:  5'- cGGCCGCagcagCGcCCGCGAGCCCUgccggCGCGCCu -3'
miRNA:   3'- cCCGGCG-----GC-GGUGCUUGGGG-----GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 53745 0.77 0.134654
Target:  5'- cGGCCGCCGCUGCc-GCCgCCGCuGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGgGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.