miRNA display CGI


Results 41 - 60 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 120145 0.77 0.133702
Target:  5'- cGGGCCGgUGCCGgacgacgaggaccuCGAGauCCUCCGCGCCg -3'
miRNA:   3'- -CCCGGCgGCGGU--------------GCUU--GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 121223 0.77 0.135932
Target:  5'- cGGCCGCCGCCGCuacagucgccgcuGCCgCCGcCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu-----------UGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 16572 0.77 0.144516
Target:  5'- -cGCCGCCGCCACc-ACCgCCGcCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 91613 0.77 0.141158
Target:  5'- cGGCCGaggGCCACGccGACCuCCUGCGCCg -3'
miRNA:   3'- cCCGGCgg-CGGUGC--UUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 194143 0.77 0.128427
Target:  5'- cGGCCGCagcagCGcCCGCGAGCCCUgccggCGCGCCu -3'
miRNA:   3'- cCCGGCG-----GC-GGUGCUUGGGG-----GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 188334 0.77 0.131506
Target:  5'- -cGCCGCCGCCgGCGGcGCCgUCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGG-UGCU-UGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 107239 0.77 0.144516
Target:  5'- gGGGgCGgCGUCGCGGACCUggcccggcggagCCGCGCCg -3'
miRNA:   3'- -CCCgGCgGCGGUGCUUGGG------------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 151594 0.77 0.13787
Target:  5'- -cGCCGCCGCCGCGGGCCCgCgGUuCCu -3'
miRNA:   3'- ccCGGCGGCGGUGCUUGGG-GgCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 34734 0.77 0.14588
Target:  5'- cGGGCgGCCGCagagcgcgcgacggCGCGGugggacgcggcacgGCCgCCCGCGCCa -3'
miRNA:   3'- -CCCGgCGGCG--------------GUGCU--------------UGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 154342 0.77 0.134654
Target:  5'- cGGG-UGCCGCgGcCGAGCUCCCGCGCg -3'
miRNA:   3'- -CCCgGCGGCGgU-GCUUGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 53745 0.77 0.134654
Target:  5'- cGGCCGCCGCUGCc-GCCgCCGCuGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGgGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 106241 0.76 0.166241
Target:  5'- cGGGUCGCagacCGCCGCGAACCggcgaGCGCCg -3'
miRNA:   3'- -CCCGGCG----GCGGUGCUUGGggg--CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 86521 0.76 0.170135
Target:  5'- cGGGCCG-CGCCcgACcgGAugCCCCGgGCCg -3'
miRNA:   3'- -CCCGGCgGCGG--UG--CUugGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 70673 0.76 0.162427
Target:  5'- cGGCCGCCGCgGCGGugACgUCCUGuCGCCg -3'
miRNA:   3'- cCCGGCGGCGgUGCU--UG-GGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 76576 0.76 0.162427
Target:  5'- cGGcCCGCCGCCGCGcacccgcucuucGACCCgCCGgGUCg -3'
miRNA:   3'- cCC-GGCGGCGGUGC------------UUGGG-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 895 0.76 0.158692
Target:  5'- cGGGCCGggugccaaCGCCGC---UCCCCGCGCCu -3'
miRNA:   3'- -CCCGGCg-------GCGGUGcuuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 49239 0.76 0.158692
Target:  5'- aGGGCCGUCG--ACGGGCgCCCGCGCa -3'
miRNA:   3'- -CCCGGCGGCggUGCUUGgGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 82381 0.76 0.166241
Target:  5'- --aCCGCCGCgGCGGACCgCgGCGCCc -3'
miRNA:   3'- cccGGCGGCGgUGCUUGGgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 68764 0.76 0.158692
Target:  5'- cGGGCCGCCggggcGCCggACGcccGGCUCUCGCGCCc -3'
miRNA:   3'- -CCCGGCGG-----CGG--UGC---UUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 141534 0.76 0.162427
Target:  5'- cGGGCUGCuCGCCgaaggcGCGAauccGCCaCCCGCgGCCg -3'
miRNA:   3'- -CCCGGCG-GCGG------UGCU----UGG-GGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.