miRNA display CGI


Results 61 - 80 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 68764 0.76 0.158692
Target:  5'- cGGGCCGCCggggcGCCggACGcccGGCUCUCGCGCCc -3'
miRNA:   3'- -CCCGGCGG-----CGG--UGC---UUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 142 0.76 0.170135
Target:  5'- cGGGaCCGCCGCagggGCGcACCagcacgCCCGCGCCc -3'
miRNA:   3'- -CCC-GGCGGCGg---UGCuUGG------GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 141534 0.76 0.162427
Target:  5'- cGGGCUGCuCGCCgaaggcGCGAauccGCCaCCCGCgGCCg -3'
miRNA:   3'- -CCCGGCG-GCGG------UGCU----UGG-GGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 106069 0.76 0.147948
Target:  5'- uGGGCCGCCGgCACGcGGCUuuUCUGCGCUa -3'
miRNA:   3'- -CCCGGCGGCgGUGC-UUGG--GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183462 0.76 0.151453
Target:  5'- cGGcGcCCGcCCGCCGCGAguccgcggcccgAUCCCCGCGCg -3'
miRNA:   3'- -CC-C-GGC-GGCGGUGCU------------UGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 111633 0.76 0.151453
Target:  5'- cGGCCGCCGCCGguCGGGCgCCgcggCCGCgGCCa -3'
miRNA:   3'- cCCGGCGGCGGU--GCUUG-GG----GGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 192365 0.76 0.160176
Target:  5'- -cGCCGCCGCCGacCGAGCgcgggcugaccgccaCCgCCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU--GCUUG---------------GG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 76576 0.76 0.162427
Target:  5'- cGGcCCGCCGCCGCGcacccgcucuucGACCCgCCGgGUCg -3'
miRNA:   3'- cCC-GGCGGCGGUGC------------UUGGG-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 82381 0.76 0.166241
Target:  5'- --aCCGCCGCgGCGGACCgCgGCGCCc -3'
miRNA:   3'- cccGGCGGCGgUGCUUGGgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 106241 0.76 0.166241
Target:  5'- cGGGUCGCagacCGCCGCGAACCggcgaGCGCCg -3'
miRNA:   3'- -CCCGGCG----GCGGUGCUUGGggg--CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 86521 0.76 0.170135
Target:  5'- cGGGCCG-CGCCcgACcgGAugCCCCGgGCCg -3'
miRNA:   3'- -CCCGGCgGCGG--UG--CUugGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 105431 0.76 0.170135
Target:  5'- uGGCCGCCGCCGC--GCCggCgGCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGg-GgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 63504 0.75 0.174111
Target:  5'- cGGcGUCGUCGuCCGCGAcGCCuCCCGCGCg -3'
miRNA:   3'- -CC-CGGCGGC-GGUGCU-UGG-GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 36159 0.75 0.19974
Target:  5'- -cGCCGCCGCCucccccCCaCCCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGGugcuu-GG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 194053 0.75 0.194807
Target:  5'- -cGCCGCCGCCGcCGAgagcgccGCCUUCGuCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU-GCU-------UGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 152098 0.75 0.190851
Target:  5'- uGGGauaCCGCCGUCugGGGCUUgCUGCGCCg -3'
miRNA:   3'- -CCC---GGCGGCGGugCUUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 123559 0.75 0.190851
Target:  5'- cGGGCUGUucgccuucgagCGCCACGGccGCCgCCCGUGCa -3'
miRNA:   3'- -CCCGGCG-----------GCGGUGCU--UGG-GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 113943 0.75 0.181893
Target:  5'- cGGGCCGCUGCCGgGcuuccugcAGCCacuccugCUCGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGGUgC--------UUGG-------GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 104003 0.75 0.19974
Target:  5'- -aGCCGCCGCCgGCGGaacGCCUCCGCaGCg -3'
miRNA:   3'- ccCGGCGGCGG-UGCU---UGGGGGCG-CGg -5'
10864 3' -65.2 NC_002794.1 + 148597 0.75 0.190851
Target:  5'- cGGCCGCCGuCCACGGACucggCCCUGCa-- -3'
miRNA:   3'- cCCGGCGGC-GGUGCUUG----GGGGCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.