miRNA display CGI


Results 81 - 100 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 148597 0.75 0.190851
Target:  5'- cGGCCGCCGuCCACGGACucggCCCUGCa-- -3'
miRNA:   3'- cCCGGCGGC-GGUGCUUG----GGGGCGcgg -5'
10864 3' -65.2 NC_002794.1 + 143437 0.75 0.182311
Target:  5'- aGGCCaGCaugacgGUCACGAGCCCgCCGCGCg -3'
miRNA:   3'- cCCGG-CGg-----CGGUGCUUGGG-GGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 152098 0.75 0.190851
Target:  5'- uGGGauaCCGCCGUCugGGGCUUgCUGCGCCg -3'
miRNA:   3'- -CCC---GGCGGCGGugCUUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 194053 0.75 0.194807
Target:  5'- -cGCCGCCGCCGcCGAgagcgccGCCUUCGuCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU-GCU-------UGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 83783 0.75 0.182311
Target:  5'- -cGCCGCCGCCGCGuccGCCguCCUGcCGCCc -3'
miRNA:   3'- ccCGGCGGCGGUGCu--UGG--GGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 8318 0.75 0.186538
Target:  5'- cGGCa-CCGCCGCG---CCCCGCGCCa -3'
miRNA:   3'- cCCGgcGGCGGUGCuugGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 63504 0.75 0.174111
Target:  5'- cGGcGUCGUCGuCCGCGAcGCCuCCCGCGCg -3'
miRNA:   3'- -CC-CGGCGGC-GGUGCU-UGG-GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 49164 0.75 0.190851
Target:  5'- cGGGCCGuCCGggaggccgagcCCACGGccuucucguCCCCCGCGUCc -3'
miRNA:   3'- -CCCGGC-GGC-----------GGUGCUu--------GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 113943 0.75 0.181893
Target:  5'- cGGGCCGCUGCCGgGcuuccugcAGCCacuccugCUCGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGGUgC--------UUGG-------GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 99787 0.74 0.218602
Target:  5'- cGGCgucgacuacgagCGCgCGCCGCGGGCgCCgGCGCCg -3'
miRNA:   3'- cCCG------------GCG-GCGGUGCUUGgGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 59654 0.74 0.213748
Target:  5'- cGGUCGCCacggcGCUGCaGAGCCgCCUGCGCCu -3'
miRNA:   3'- cCCGGCGG-----CGGUG-CUUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 84982 0.74 0.213748
Target:  5'- cGGCCGCgaaaccCCACGAGCCCgaccgCCGCGCUc -3'
miRNA:   3'- cCCGGCGgc----GGUGCUUGGG-----GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 127519 0.74 0.228592
Target:  5'- gGGGCUguGCCGCCGCGAuCCugCUgGCGCUg -3'
miRNA:   3'- -CCCGG--CGGCGGUGCUuGG--GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34812 0.74 0.218602
Target:  5'- cGGGCCGCgCGaCACc-ACCCCCuCGCCg -3'
miRNA:   3'- -CCCGGCG-GCgGUGcuUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 21593 0.74 0.228592
Target:  5'- gGGGCgGUCuguGCC-CGuGACCCaCCGCGCCg -3'
miRNA:   3'- -CCCGgCGG---CGGuGC-UUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 17625 0.74 0.223549
Target:  5'- --cCCGCCGCgGCGAGCgaUCCCGcCGCCg -3'
miRNA:   3'- cccGGCGGCGgUGCUUG--GGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 40547 0.74 0.213748
Target:  5'- gGGGCCGgCGgCAUGAGCUucucgUUCGCGCCg -3'
miRNA:   3'- -CCCGGCgGCgGUGCUUGG-----GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187536 0.74 0.223549
Target:  5'- --cCCGCCGCCGCGAccGCCgccaCCGcCGCCg -3'
miRNA:   3'- cccGGCGGCGGUGCU--UGGg---GGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 124260 0.74 0.213748
Target:  5'- cGGGuaGUCGCCgGCcAGCCgCCGCGCCg -3'
miRNA:   3'- -CCCggCGGCGG-UGcUUGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 82724 0.74 0.228592
Target:  5'- -cGCCGCgccaccacuCGCCGCGAGCCgCCGCcaccGCCg -3'
miRNA:   3'- ccCGGCG---------GCGGUGCUUGGgGGCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.