miRNA display CGI


Results 1 - 20 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 35829 1.11 0.000499
Target:  5'- cGGGCCGCCGCCACGAACCCCCGCGCCc -3'
miRNA:   3'- -CCCGGCGGCGGUGCUUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 58019 1 0.003268
Target:  5'- gGGGCCGCCGCCgGCGAACCCgCCGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGG-UGCUUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 84090 0.86 0.03097
Target:  5'- -cGCCGCCGCCAcccgccucccCGGACaCCCCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU----------GCUUG-GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183608 0.86 0.035094
Target:  5'- gGGGCCGCgCGCgGcCGGcGCCCCCGCGCCc -3'
miRNA:   3'- -CCCGGCG-GCGgU-GCU-UGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 186939 0.84 0.041785
Target:  5'- --aCCGCCGCCACG-GCCCCCGgGCCg -3'
miRNA:   3'- cccGGCGGCGGUGCuUGGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 81554 0.84 0.048501
Target:  5'- cGGCUGCCGCCGCcgccGCCgCCGCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu--UGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 40282 0.83 0.050965
Target:  5'- cGGGUCGCCGCUACGcgUCCgUCGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGGUGCuuGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 107031 0.82 0.062097
Target:  5'- cGG-CGCCGCUggGGACCCCCGCGUCg -3'
miRNA:   3'- cCCgGCGGCGGugCUUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 182992 0.82 0.065228
Target:  5'- cGGCCGgcgcuUCGCCGCGGGCgCCCCGCGCg -3'
miRNA:   3'- cCCGGC-----GGCGGUGCUUG-GGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 194019 0.82 0.065228
Target:  5'- cGGCCGCCGCCGcCGGcgccucGCCCgCCGcCGCCg -3'
miRNA:   3'- cCCGGCGGCGGU-GCU------UGGG-GGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 107166 0.81 0.070212
Target:  5'- aGGGCCGCCGCUACGcGGCggagCCgGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGGUGC-UUGg---GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187591 0.81 0.073736
Target:  5'- cGGCCGCCGUCGCGAcgCCCgGCGUCg -3'
miRNA:   3'- cCCGGCGGCGGUGCUugGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 121382 0.81 0.07743
Target:  5'- cGGCCGCCGCCG-GGACCgcggCCgGCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUgCUUGG----GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 23238 0.8 0.079342
Target:  5'- cGGGgCGuuGCCguGCGAGCCUCCGcCGCCg -3'
miRNA:   3'- -CCCgGCggCGG--UGCUUGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 124416 0.8 0.0813
Target:  5'- gGGcGCCGuCCGCCGCGGucucuCUCCCGCGCg -3'
miRNA:   3'- -CC-CGGC-GGCGGUGCUu----GGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 56561 0.8 0.0813
Target:  5'- -cGCCGCCcccGCCGCcGACCgCCCGCGCCg -3'
miRNA:   3'- ccCGGCGG---CGGUGcUUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187921 0.8 0.089601
Target:  5'- cGGGCC-CCGCCGCG-ACCgUCGCGUCa -3'
miRNA:   3'- -CCCGGcGGCGGUGCuUGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 189895 0.79 0.098704
Target:  5'- cGGGCCcgccgucagcGCCGCCGCGcGACCgCCCGCucGCCc -3'
miRNA:   3'- -CCCGG----------CGGCGGUGC-UUGG-GGGCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 80432 0.79 0.100869
Target:  5'- gGGGCCGCCGCCgGCGGccGCCggcccgucggcggCCCGCuGCCc -3'
miRNA:   3'- -CCCGGCGGCGG-UGCU--UGG-------------GGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 17653 0.79 0.101113
Target:  5'- cGGCCGCCGCCACcgccGCCaCCGcCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu--UGGgGGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.