miRNA display CGI


Results 41 - 60 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 154342 0.77 0.134654
Target:  5'- cGGG-UGCCGCgGcCGAGCUCCCGCGCg -3'
miRNA:   3'- -CCCgGCGGCGgU-GCUUGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 53745 0.77 0.134654
Target:  5'- cGGCCGCCGCUGCc-GCCgCCGCuGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGgGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 121223 0.77 0.135932
Target:  5'- cGGCCGCCGCCGCuacagucgccgcuGCCgCCGcCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu-----------UGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 96681 0.77 0.135932
Target:  5'- gGGGCCGCCGCCcccccuccgccggcaGCGccuucuccuCCCCCG-GCCg -3'
miRNA:   3'- -CCCGGCGGCGG---------------UGCuu-------GGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 12022 0.77 0.13787
Target:  5'- -cGCCGCCgGCC-CGGGCgUCCGCGCCu -3'
miRNA:   3'- ccCGGCGG-CGGuGCUUGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 151594 0.77 0.13787
Target:  5'- -cGCCGCCGCCGCGGGCCCgCgGUuCCu -3'
miRNA:   3'- ccCGGCGGCGGUGCUUGGG-GgCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 91613 0.77 0.141158
Target:  5'- cGGCCGaggGCCACGccGACCuCCUGCGCCg -3'
miRNA:   3'- cCCGGCgg-CGGUGC--UUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 107239 0.77 0.144516
Target:  5'- gGGGgCGgCGUCGCGGACCUggcccggcggagCCGCGCCg -3'
miRNA:   3'- -CCCgGCgGCGGUGCUUGGG------------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 90483 0.77 0.144516
Target:  5'- gGGGCCGCCGUCccgcGCGAucggccgucCCCgCCGCGCg -3'
miRNA:   3'- -CCCGGCGGCGG----UGCUu--------GGG-GGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 16572 0.77 0.144516
Target:  5'- -cGCCGCCGCCACc-ACCgCCGcCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 34734 0.77 0.14588
Target:  5'- cGGGCgGCCGCagagcgcgcgacggCGCGGugggacgcggcacgGCCgCCCGCGCCa -3'
miRNA:   3'- -CCCGgCGGCG--------------GUGCU--------------UGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 38534 0.76 0.147948
Target:  5'- aGGUCGCCGCCGCcgccGCCUCCcCGCCa -3'
miRNA:   3'- cCCGGCGGCGGUGcu--UGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 78064 0.76 0.147948
Target:  5'- -cGCCGCCGCC-CGAACgCCgGcCGCCg -3'
miRNA:   3'- ccCGGCGGCGGuGCUUGgGGgC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 106069 0.76 0.147948
Target:  5'- uGGGCCGCCGgCACGcGGCUuuUCUGCGCUa -3'
miRNA:   3'- -CCCGGCGGCgGUGC-UUGG--GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 140015 0.76 0.147948
Target:  5'- aGGCCGCggagGCCGCG-GCCCCCGCGg- -3'
miRNA:   3'- cCCGGCGg---CGGUGCuUGGGGGCGCgg -5'
10864 3' -65.2 NC_002794.1 + 183462 0.76 0.151453
Target:  5'- cGGcGcCCGcCCGCCGCGAguccgcggcccgAUCCCCGCGCg -3'
miRNA:   3'- -CC-C-GGC-GGCGGUGCU------------UGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 111633 0.76 0.151453
Target:  5'- cGGCCGCCGCCGguCGGGCgCCgcggCCGCgGCCa -3'
miRNA:   3'- cCCGGCGGCGGU--GCUUG-GG----GGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 152585 0.76 0.155034
Target:  5'- cGGCgGCCGCCACG--UCCCUGCGgCg -3'
miRNA:   3'- cCCGgCGGCGGUGCuuGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 895 0.76 0.158692
Target:  5'- cGGGCCGggugccaaCGCCGC---UCCCCGCGCCu -3'
miRNA:   3'- -CCCGGCg-------GCGGUGcuuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 68764 0.76 0.158692
Target:  5'- cGGGCCGCCggggcGCCggACGcccGGCUCUCGCGCCc -3'
miRNA:   3'- -CCCGGCGG-----CGG--UGC---UUGGGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.