Results 61 - 80 of 594 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10864 | 3' | -65.2 | NC_002794.1 | + | 895 | 0.76 | 0.158692 |
Target: 5'- cGGGCCGggugccaaCGCCGC---UCCCCGCGCCu -3' miRNA: 3'- -CCCGGCg-------GCGGUGcuuGGGGGCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 60062 | 0.76 | 0.158692 |
Target: 5'- cGGCCGCCGCaC-CGugccGCCgCCCGCGCa -3' miRNA: 3'- cCCGGCGGCG-GuGCu---UGG-GGGCGCGg -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 192365 | 0.76 | 0.160176 |
Target: 5'- -cGCCGCCGCCGacCGAGCgcgggcugaccgccaCCgCCGCGCCg -3' miRNA: 3'- ccCGGCGGCGGU--GCUUG---------------GG-GGCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 141534 | 0.76 | 0.162427 |
Target: 5'- cGGGCUGCuCGCCgaaggcGCGAauccGCCaCCCGCgGCCg -3' miRNA: 3'- -CCCGGCG-GCGG------UGCU----UGG-GGGCG-CGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 76576 | 0.76 | 0.162427 |
Target: 5'- cGGcCCGCCGCCGCGcacccgcucuucGACCCgCCGgGUCg -3' miRNA: 3'- cCC-GGCGGCGGUGC------------UUGGG-GGCgCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 70673 | 0.76 | 0.162427 |
Target: 5'- cGGCCGCCGCgGCGGugACgUCCUGuCGCCg -3' miRNA: 3'- cCCGGCGGCGgUGCU--UG-GGGGC-GCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 106241 | 0.76 | 0.166241 |
Target: 5'- cGGGUCGCagacCGCCGCGAACCggcgaGCGCCg -3' miRNA: 3'- -CCCGGCG----GCGGUGCUUGGggg--CGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 82381 | 0.76 | 0.166241 |
Target: 5'- --aCCGCCGCgGCGGACCgCgGCGCCc -3' miRNA: 3'- cccGGCGGCGgUGCUUGGgGgCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 142 | 0.76 | 0.170135 |
Target: 5'- cGGGaCCGCCGCagggGCGcACCagcacgCCCGCGCCc -3' miRNA: 3'- -CCC-GGCGGCGg---UGCuUGG------GGGCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 86521 | 0.76 | 0.170135 |
Target: 5'- cGGGCCG-CGCCcgACcgGAugCCCCGgGCCg -3' miRNA: 3'- -CCCGGCgGCGG--UG--CUugGGGGCgCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 105431 | 0.76 | 0.170135 |
Target: 5'- uGGCCGCCGCCGC--GCCggCgGCGCCg -3' miRNA: 3'- cCCGGCGGCGGUGcuUGGg-GgCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 86353 | 0.76 | 0.170135 |
Target: 5'- cGGGCCG-CGCCcgACcgGAugCCCCGgGCCg -3' miRNA: 3'- -CCCGGCgGCGG--UG--CUugGGGGCgCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 67851 | 0.75 | 0.174111 |
Target: 5'- cGGcGCCGCCG-CGCGucaCCCgGCGCCa -3' miRNA: 3'- -CC-CGGCGGCgGUGCuugGGGgCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 63504 | 0.75 | 0.174111 |
Target: 5'- cGGcGUCGUCGuCCGCGAcGCCuCCCGCGCg -3' miRNA: 3'- -CC-CGGCGGC-GGUGCU-UGG-GGGCGCGg -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 118682 | 0.75 | 0.174111 |
Target: 5'- cGGCCGCCGCCgGCGGcaGCgCCCaggaGCGCa -3' miRNA: 3'- cCCGGCGGCGG-UGCU--UG-GGGg---CGCGg -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 113943 | 0.75 | 0.181893 |
Target: 5'- cGGGCCGCUGCCGgGcuuccugcAGCCacuccugCUCGCGCCg -3' miRNA: 3'- -CCCGGCGGCGGUgC--------UUGG-------GGGCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 83783 | 0.75 | 0.182311 |
Target: 5'- -cGCCGCCGCCGCGuccGCCguCCUGcCGCCc -3' miRNA: 3'- ccCGGCGGCGGUGCu--UGG--GGGC-GCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 143437 | 0.75 | 0.182311 |
Target: 5'- aGGCCaGCaugacgGUCACGAGCCCgCCGCGCg -3' miRNA: 3'- cCCGG-CGg-----CGGUGCUUGGG-GGCGCGg -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 108201 | 0.75 | 0.182311 |
Target: 5'- cGGCgcugCGCCGCCGCGccGgCCUCGCGCCc -3' miRNA: 3'- cCCG----GCGGCGGUGCu-UgGGGGCGCGG- -5' |
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10864 | 3' | -65.2 | NC_002794.1 | + | 79028 | 0.75 | 0.182311 |
Target: 5'- cGGCCGCCuucugccgGCC-CGGccGCUCCCGCGCUc -3' miRNA: 3'- cCCGGCGG--------CGGuGCU--UGGGGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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