miRNA display CGI


Results 81 - 100 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 8318 0.75 0.186538
Target:  5'- cGGCa-CCGCCGCG---CCCCGCGCCa -3'
miRNA:   3'- cCCGgcGGCGGUGCuugGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 152098 0.75 0.190851
Target:  5'- uGGGauaCCGCCGUCugGGGCUUgCUGCGCCg -3'
miRNA:   3'- -CCC---GGCGGCGGugCUUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 181409 0.75 0.190851
Target:  5'- cGGCCGCCGCCACc-GCCauguCCGCgaaGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGg---GGCG---CGG- -5'
10864 3' -65.2 NC_002794.1 + 148597 0.75 0.190851
Target:  5'- cGGCCGCCGuCCACGGACucggCCCUGCa-- -3'
miRNA:   3'- cCCGGCGGC-GGUGCUUG----GGGGCGcgg -5'
10864 3' -65.2 NC_002794.1 + 49164 0.75 0.190851
Target:  5'- cGGGCCGuCCGggaggccgagcCCACGGccuucucguCCCCCGCGUCc -3'
miRNA:   3'- -CCCGGC-GGC-----------GGUGCUu--------GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 123559 0.75 0.190851
Target:  5'- cGGGCUGUucgccuucgagCGCCACGGccGCCgCCCGUGCa -3'
miRNA:   3'- -CCCGGCG-----------GCGGUGCU--UGG-GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 194053 0.75 0.194807
Target:  5'- -cGCCGCCGCCGcCGAgagcgccGCCUUCGuCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU-GCU-------UGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 104003 0.75 0.19974
Target:  5'- -aGCCGCCGCCgGCGGaacGCCUCCGCaGCg -3'
miRNA:   3'- ccCGGCGGCGG-UGCU---UGGGGGCG-CGg -5'
10864 3' -65.2 NC_002794.1 + 36159 0.75 0.19974
Target:  5'- -cGCCGCCGCCucccccCCaCCCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGGugcuu-GG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 156414 0.74 0.202935
Target:  5'- cGGCCGCgGCCACGGccggcgggugagagACCggUCGCGCCg -3'
miRNA:   3'- cCCGGCGgCGGUGCU--------------UGGg-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 69055 0.74 0.204318
Target:  5'- --uCCGCuCGCCACGGGCCgCCGCcgGCCg -3'
miRNA:   3'- cccGGCG-GCGGUGCUUGGgGGCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 63905 0.74 0.204318
Target:  5'- cGGCCGUcgcucgCGCCGCGAccGCCgCCCG-GCCg -3'
miRNA:   3'- cCCGGCG------GCGGUGCU--UGG-GGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 194722 0.74 0.204318
Target:  5'- -aGCCGCCGCguCACGAACUCCaCGCaCCg -3'
miRNA:   3'- ccCGGCGGCG--GUGCUUGGGG-GCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 150358 0.74 0.208988
Target:  5'- -cGUCGCgGCCGaGAACCUCCGCGUCu -3'
miRNA:   3'- ccCGGCGgCGGUgCUUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34251 0.74 0.208988
Target:  5'- cGGCUGCCGCCgcagGCGGACCgcgcgcaggcggCCaGCGCCa -3'
miRNA:   3'- cCCGGCGGCGG----UGCUUGG------------GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 16308 0.74 0.208988
Target:  5'- cGGCCGCgGCCGgcUGGAUCCCCcUGCCc -3'
miRNA:   3'- cCCGGCGgCGGU--GCUUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 184532 0.74 0.208988
Target:  5'- cGGGCgacgccgcccacCGCCGCCucuuCGGacGCCUCaCGCGCCg -3'
miRNA:   3'- -CCCG------------GCGGCGGu---GCU--UGGGG-GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 23574 0.74 0.208988
Target:  5'- cGGuGCCGCCGCCACccgccGAUCCaCCGaucCGCCg -3'
miRNA:   3'- -CC-CGGCGGCGGUGc----UUGGG-GGC---GCGG- -5'
10864 3' -65.2 NC_002794.1 + 72920 0.74 0.213268
Target:  5'- -cGCCGCCGCCGuCGGAgccggcgUCCgCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGGU-GCUU-------GGGgGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 124260 0.74 0.213748
Target:  5'- cGGGuaGUCGCCgGCcAGCCgCCGCGCCg -3'
miRNA:   3'- -CCCggCGGCGG-UGcUUGGgGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.