miRNA display CGI


Results 41 - 60 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 47409 0.66 0.594267
Target:  5'- -aGCCGCCGUCG-GcGCCgUCGCGCg -3'
miRNA:   3'- ccCGGCGGCGGUgCuUGGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 66844 0.66 0.594267
Target:  5'- gGGcGCCGCCGUCggcgcgGCGAGgCCgCgGCGUg -3'
miRNA:   3'- -CC-CGGCGGCGG------UGCUUgGG-GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 12065 0.66 0.594267
Target:  5'- uGGGCCgcGCCGCCgAUGAACa--CGaCGCUg -3'
miRNA:   3'- -CCCGG--CGGCGG-UGCUUGgggGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 13073 0.66 0.594267
Target:  5'- gGGGCCGCgCGaCCggcGCGAAgUCCCGgGg- -3'
miRNA:   3'- -CCCGGCG-GC-GG---UGCUUgGGGGCgCgg -5'
10864 3' -65.2 NC_002794.1 + 190678 0.66 0.594267
Target:  5'- -cGCCGCCGggucuCCACGcacACCuCCCgGCGCa -3'
miRNA:   3'- ccCGGCGGC-----GGUGCu--UGG-GGG-CGCGg -5'
10864 3' -65.2 NC_002794.1 + 110344 0.66 0.594267
Target:  5'- gGGGucuCCGCCGUgGCGAcgCCUCGuCGUCg -3'
miRNA:   3'- -CCC---GGCGGCGgUGCUugGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 127604 0.66 0.594267
Target:  5'- cGGCCGCUGagcggCGCGGACCggaCUCGuCGUCg -3'
miRNA:   3'- cCCGGCGGCg----GUGCUUGG---GGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 122314 0.66 0.594267
Target:  5'- uGGCCGUCGCCgugcgcgugGCGuuGgCCCUG-GCCg -3'
miRNA:   3'- cCCGGCGGCGG---------UGCu-UgGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 143859 0.66 0.594267
Target:  5'- aGGCgauCGCCGCCGCGGcgucaaauaugGCCUCgccgaGCGUCc -3'
miRNA:   3'- cCCG---GCGGCGGUGCU-----------UGGGGg----CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 195555 0.66 0.594267
Target:  5'- -cGCCcugaGCCGCCcCGAGCCgCCC-CGaCCg -3'
miRNA:   3'- ccCGG----CGGCGGuGCUUGG-GGGcGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 150801 0.66 0.594267
Target:  5'- aGGCC-CCGCgGCGGACggCCGaGCCg -3'
miRNA:   3'- cCCGGcGGCGgUGCUUGggGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 35773 0.66 0.593337
Target:  5'- cGGCacCGUCGCCggcgucgucuccgGCGugaCCCUGCGCCc -3'
miRNA:   3'- cCCG--GCGGCGG-------------UGCuugGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 190483 0.66 0.591476
Target:  5'- cGGGUgccccaCGCCGCCcaggagauaccacgGCGuGCCCagccgCGUGCCg -3'
miRNA:   3'- -CCCG------GCGGCGG--------------UGCuUGGGg----GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 76487 0.66 0.584975
Target:  5'- cGGCCGCaGCUcCGAccccgACCCCgGCcCCg -3'
miRNA:   3'- cCCGGCGgCGGuGCU-----UGGGGgCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 180287 0.66 0.584975
Target:  5'- cGGCCcgcGCCGCCGC-AACaCgCCG-GCCg -3'
miRNA:   3'- cCCGG---CGGCGGUGcUUG-GgGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 101453 0.66 0.584975
Target:  5'- cGGCgCGcCCGCC-CGAaacGCCggCGCGCCc -3'
miRNA:   3'- cCCG-GC-GGCGGuGCU---UGGggGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 113381 0.66 0.584975
Target:  5'- cGGGCCGCCGUCgugcagGCGcuGCagcaCCCGgaGCUg -3'
miRNA:   3'- -CCCGGCGGCGG------UGCu-UGg---GGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 114033 0.66 0.584975
Target:  5'- gGGGCagcgGCCGCC-CGuagUCgCCGCGCa -3'
miRNA:   3'- -CCCGg---CGGCGGuGCuu-GGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 128435 0.66 0.584975
Target:  5'- cGGGUgGCCcgcGCgCACGGcGCCUCCGgaGCCc -3'
miRNA:   3'- -CCCGgCGG---CG-GUGCU-UGGGGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 78929 0.66 0.584975
Target:  5'- cGGGCaccCGCCGCCGgcaGGucACCCaggcccacaaCCGcCGCCa -3'
miRNA:   3'- -CCCG---GCGGCGGUg--CU--UGGG----------GGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.