miRNA display CGI


Results 61 - 80 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 17416 0.66 0.584975
Target:  5'- --aCCGCgGCCAuCGcggUCUCCGCGCCg -3'
miRNA:   3'- cccGGCGgCGGU-GCuu-GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 6591 0.66 0.584975
Target:  5'- --aCCGCCGCCAU--GCUCgCGgGCCg -3'
miRNA:   3'- cccGGCGGCGGUGcuUGGGgGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 63962 0.66 0.584975
Target:  5'- -cGCCGCgCGCC-CGAaucACCgCCGUGaCCc -3'
miRNA:   3'- ccCGGCG-GCGGuGCU---UGGgGGCGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 55486 0.66 0.584975
Target:  5'- -cGuCCGCCGCC-CGGaacaggaugacGgUCCUGCGCCa -3'
miRNA:   3'- ccC-GGCGGCGGuGCU-----------UgGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 195438 0.66 0.584975
Target:  5'- cGGaGCCGCuCG-CACGcACCCacaCCGaCGCCc -3'
miRNA:   3'- -CC-CGGCG-GCgGUGCuUGGG---GGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 180287 0.66 0.584975
Target:  5'- cGGCCcgcGCCGCCGC-AACaCgCCG-GCCg -3'
miRNA:   3'- cCCGG---CGGCGGUGcUUG-GgGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 101453 0.66 0.584975
Target:  5'- cGGCgCGcCCGCC-CGAaacGCCggCGCGCCc -3'
miRNA:   3'- cCCG-GC-GGCGGuGCU---UGGggGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 113381 0.66 0.584975
Target:  5'- cGGGCCGCCGUCgugcagGCGcuGCagcaCCCGgaGCUg -3'
miRNA:   3'- -CCCGGCGGCGG------UGCu-UGg---GGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 114033 0.66 0.584975
Target:  5'- gGGGCagcgGCCGCC-CGuagUCgCCGCGCa -3'
miRNA:   3'- -CCCGg---CGGCGGuGCuu-GGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 128435 0.66 0.584975
Target:  5'- cGGGUgGCCcgcGCgCACGGcGCCUCCGgaGCCc -3'
miRNA:   3'- -CCCGgCGG---CG-GUGCU-UGGGGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 78929 0.66 0.584975
Target:  5'- cGGGCaccCGCCGCCGgcaGGucACCCaggcccacaaCCGcCGCCa -3'
miRNA:   3'- -CCCG---GCGGCGGUg--CU--UGGG----------GGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 76487 0.66 0.584975
Target:  5'- cGGCCGCaGCUcCGAccccgACCCCgGCcCCg -3'
miRNA:   3'- cCCGGCGgCGGuGCU-----UGGGGgCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 39542 0.66 0.584975
Target:  5'- gGGGCUGCUG-UGCG-GCCUCUGCGgCg -3'
miRNA:   3'- -CCCGGCGGCgGUGCuUGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 53612 0.66 0.583119
Target:  5'- cGGGCCGCCGCagcgucggacggACGAGgUCggCCGaGCCg -3'
miRNA:   3'- -CCCGGCGGCGg-----------UGCUUgGG--GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 74870 0.66 0.576635
Target:  5'- uGGCCGCCucuCCGCGAACgCacuaucuccuguucaCGCGCa -3'
miRNA:   3'- cCCGGCGGc--GGUGCUUGgGg--------------GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 180782 0.66 0.57571
Target:  5'- cGGGCgGUgGCCGgGGAUCUCCGUuugaGCg -3'
miRNA:   3'- -CCCGgCGgCGGUgCUUGGGGGCG----CGg -5'
10864 3' -65.2 NC_002794.1 + 69279 0.66 0.57571
Target:  5'- cGGuCCGCCGCCgaACGccGCCaCUGcCGCCa -3'
miRNA:   3'- cCC-GGCGGCGG--UGCu-UGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 28722 0.66 0.57571
Target:  5'- -cGCCGCCGuCCGacCGugUCCCCGagGCCc -3'
miRNA:   3'- ccCGGCGGC-GGU--GCuuGGGGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 194221 0.66 0.57571
Target:  5'- cGGGCCGuucagguaguCCGucugaucgugguCCGCGAACagcucgCCCGaCGCCg -3'
miRNA:   3'- -CCCGGC----------GGC------------GGUGCUUGg-----GGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 183528 0.66 0.57571
Target:  5'- cGGCCGugcgcgccccguCCGcCCGgGGACaCUgCGCGCCg -3'
miRNA:   3'- cCCGGC------------GGC-GGUgCUUG-GGgGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.