miRNA display CGI


Results 1 - 20 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 60 0.7 0.395085
Target:  5'- cGGCCGacgcCCGCCAcCGGuaacgaaacGCCCCCGaggcacaccgaaCGCCg -3'
miRNA:   3'- cCCGGC----GGCGGU-GCU---------UGGGGGC------------GCGG- -5'
10864 3' -65.2 NC_002794.1 + 142 0.76 0.170135
Target:  5'- cGGGaCCGCCGCagggGCGcACCagcacgCCCGCGCCc -3'
miRNA:   3'- -CCC-GGCGGCGg---UGCuUGG------GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 260 0.71 0.320813
Target:  5'- -uGCCGCCGCgcgCGCGGacgcgaggacggcgGCCCUggCGCGCCg -3'
miRNA:   3'- ccCGGCGGCG---GUGCU--------------UGGGG--GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 310 0.69 0.41074
Target:  5'- cGGGcCCGCC-CCAC---CCCCaCGCGCg -3'
miRNA:   3'- -CCC-GGCGGcGGUGcuuGGGG-GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 768 0.68 0.459924
Target:  5'- cGGGcCCGCgGUgcauuuggCACGGugCCaaCCGUGCCg -3'
miRNA:   3'- -CCC-GGCGgCG--------GUGCUugGG--GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 895 0.76 0.158692
Target:  5'- cGGGCCGggugccaaCGCCGC---UCCCCGCGCCu -3'
miRNA:   3'- -CCCGGCg-------GCGGUGcuuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 2620 0.7 0.37982
Target:  5'- cGGCCGCCGgCGCGcgUCCCCaGCa-- -3'
miRNA:   3'- cCCGGCGGCgGUGCuuGGGGG-CGcgg -5'
10864 3' -65.2 NC_002794.1 + 3807 0.71 0.316162
Target:  5'- cGGGUCGgUGCCAaccGCCCCCGCagaggcggaGCCu -3'
miRNA:   3'- -CCCGGCgGCGGUgcuUGGGGGCG---------CGG- -5'
10864 3' -65.2 NC_002794.1 + 6591 0.66 0.584975
Target:  5'- --aCCGCCGCCAU--GCUCgCGgGCCg -3'
miRNA:   3'- cccGGCGGCGGUGcuUGGGgGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 8318 0.75 0.186538
Target:  5'- cGGCa-CCGCCGCG---CCCCGCGCCa -3'
miRNA:   3'- cCCGgcGGCGGUGCuugGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 8521 0.69 0.417909
Target:  5'- aGGCC-CCGCCccugcACGAagucugggagcagACCgUCCGCGCCu -3'
miRNA:   3'- cCCGGcGGCGG-----UGCU-------------UGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 9124 0.66 0.612916
Target:  5'- aGGCCGg-GCgACGAACCgCgCGCGCg -3'
miRNA:   3'- cCCGGCggCGgUGCUUGGgG-GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 10839 0.66 0.622262
Target:  5'- cGGcGCCcuGCuCGUCACGcucGACCCUCGgaaGCCg -3'
miRNA:   3'- -CC-CGG--CG-GCGGUGC---UUGGGGGCg--CGG- -5'
10864 3' -65.2 NC_002794.1 + 11649 0.71 0.316162
Target:  5'- cGGGCgGCCGacgaCGCG-GCCCgCCG-GCCa -3'
miRNA:   3'- -CCCGgCGGCg---GUGCuUGGG-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 11804 0.73 0.254702
Target:  5'- uGGcGCCGCCGCCGCcgucgccgccuucGcuCCCCCccuCGCCg -3'
miRNA:   3'- -CC-CGGCGGCGGUG-------------CuuGGGGGc--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 12022 0.77 0.13787
Target:  5'- -cGCCGCCgGCC-CGGGCgUCCGCGCCu -3'
miRNA:   3'- ccCGGCGG-CGGuGCUUGgGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 12065 0.66 0.594267
Target:  5'- uGGGCCgcGCCGCCgAUGAACa--CGaCGCUg -3'
miRNA:   3'- -CCCGG--CGGCGG-UGCUUGgggGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 12158 0.7 0.395085
Target:  5'- cGGCCGaUCGCC-CGGAUCgUCGcCGCCg -3'
miRNA:   3'- cCCGGC-GGCGGuGCUUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 12187 0.67 0.529086
Target:  5'- -cGCCGCCGCgGcCGGGCgCCgcucggaCGUGCCg -3'
miRNA:   3'- ccCGGCGGCGgU-GCUUGgGG-------GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 12399 0.69 0.426774
Target:  5'- uGGCCGacaaCCGCaCGCGGACggCgCGCGCCg -3'
miRNA:   3'- cCCGGC----GGCG-GUGCUUGg-GgGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.