miRNA display CGI


Results 21 - 40 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 12652 0.68 0.468424
Target:  5'- cGGGuaCCGCacCGCCACGcuggugaUCCCGCGCUu -3'
miRNA:   3'- -CCC--GGCG--GCGGUGCuug----GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 12756 0.69 0.443175
Target:  5'- aGGaGCUGCCGCUcuuGCc-GCCgCCGCGCUu -3'
miRNA:   3'- -CC-CGGCGGCGG---UGcuUGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 13073 0.66 0.594267
Target:  5'- gGGGCCGCgCGaCCggcGCGAAgUCCCGgGg- -3'
miRNA:   3'- -CCCGGCG-GC-GG---UGCUUgGGGGCgCgg -5'
10864 3' -65.2 NC_002794.1 + 13121 0.7 0.395085
Target:  5'- gGGGUCGCCG-CGCGGcUCgCUCGCGCg -3'
miRNA:   3'- -CCCGGCGGCgGUGCUuGG-GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 13279 0.68 0.502309
Target:  5'- cGGCCGCUGUUgacggcggcauggGCGcuuCCCCCcCGCCc -3'
miRNA:   3'- cCCGGCGGCGG-------------UGCuu-GGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 13368 0.68 0.459924
Target:  5'- cGGGCCcuccuCCcCCuCGAGCCCCUcCGCCc -3'
miRNA:   3'- -CCCGGc----GGcGGuGCUUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 13796 0.66 0.57571
Target:  5'- cGGCCGUcuuCGCgACGGGCCCggCCgGCGgCg -3'
miRNA:   3'- cCCGGCG---GCGgUGCUUGGG--GG-CGCgG- -5'
10864 3' -65.2 NC_002794.1 + 13862 0.78 0.125414
Target:  5'- -cGCCGCCGCCGCGAcccgguuCUCCgaGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGCUu------GGGGg-CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 14165 0.67 0.566479
Target:  5'- --cCCGCCGCC-UGAACCU--GCGCCu -3'
miRNA:   3'- cccGGCGGCGGuGCUUGGGggCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 14525 0.72 0.29618
Target:  5'- uGGcGCCGCUcgGCCACGGcgcucucGCCCCCgucgacGCGCg -3'
miRNA:   3'- -CC-CGGCGG--CGGUGCU-------UGGGGG------CGCGg -5'
10864 3' -65.2 NC_002794.1 + 14578 0.69 0.43493
Target:  5'- cGGCCGaCCGaaGCGGGCCgUggcgagCGCGCCg -3'
miRNA:   3'- cCCGGC-GGCggUGCUUGGgG------GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 14623 0.67 0.566479
Target:  5'- gGGGCCggagacgggGCCgGgCACGGagACgCCgGCGCCg -3'
miRNA:   3'- -CCCGG---------CGG-CgGUGCU--UGgGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 14773 0.67 0.565558
Target:  5'- aGGCCGCUgagGCCgGCGAGgCCggcgugaCCGCGaCCa -3'
miRNA:   3'- cCCGGCGG---CGG-UGCUUgGG-------GGCGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 14872 0.71 0.350498
Target:  5'- -aGCCGCCcgguucGCCGCGAgccgagaccgACCUUCGCGCUc -3'
miRNA:   3'- ccCGGCGG------CGGUGCU----------UGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 15175 0.67 0.511172
Target:  5'- aGGGCCGuUCGCCggagaccgggugaACG-ACCgCCCGCGa- -3'
miRNA:   3'- -CCCGGC-GGCGG-------------UGCuUGG-GGGCGCgg -5'
10864 3' -65.2 NC_002794.1 + 15272 0.67 0.539037
Target:  5'- cGGCgaGCCG-CGCGGcucCCUCCGCGCg -3'
miRNA:   3'- cCCGg-CGGCgGUGCUu--GGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 16308 0.74 0.208988
Target:  5'- cGGCCGCgGCCGgcUGGAUCCCCcUGCCc -3'
miRNA:   3'- cCCGGCGgCGGU--GCUUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 16472 0.69 0.451507
Target:  5'- cGGCUGCCcagcccGCCGCc-GCCUCCGcCGCCn -3'
miRNA:   3'- cCCGGCGG------CGGUGcuUGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 16504 0.73 0.238965
Target:  5'- --aCCGCCGCCGCcguCCCCgGCGUCg -3'
miRNA:   3'- cccGGCGGCGGUGcuuGGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 16572 0.77 0.144516
Target:  5'- -cGCCGCCGCCACc-ACCgCCGcCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.