miRNA display CGI


Results 41 - 60 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 16602 0.73 0.246458
Target:  5'- cGG-CGUCGCCACccccguccccacCCCCCGCGCCa -3'
miRNA:   3'- cCCgGCGGCGGUGcuu---------GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 16780 0.7 0.371595
Target:  5'- cGGCaCGCgccgacgccaaauCGCCgACGAcgcccagccGCCCCCGcCGCCg -3'
miRNA:   3'- cCCG-GCG-------------GCGG-UGCU---------UGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 16873 0.72 0.278388
Target:  5'- --aCCGCCGCCGCGGcagcaACCaCCGcCGCCg -3'
miRNA:   3'- cccGGCGGCGGUGCU-----UGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 16936 0.68 0.468424
Target:  5'- cGGcGCCgaGCCGCCACcgccUCCCCaCGCCc -3'
miRNA:   3'- -CC-CGG--CGGCGGUGcuu-GGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 17213 0.73 0.238965
Target:  5'- -cGCCGCCGCCACc-ACCgCCGCcaccGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGCG----CGG- -5'
10864 3' -65.2 NC_002794.1 + 17329 0.69 0.402082
Target:  5'- aGGCCGCCGgCGuccccucCG-ACCCacgCCGUGCCg -3'
miRNA:   3'- cCCGGCGGCgGU-------GCuUGGG---GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 17416 0.66 0.584975
Target:  5'- --aCCGCgGCCAuCGcggUCUCCGCGCCg -3'
miRNA:   3'- cccGGCGgCGGU-GCuu-GGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 17625 0.74 0.223549
Target:  5'- --cCCGCCGCgGCGAGCgaUCCCGcCGCCg -3'
miRNA:   3'- cccGGCGGCGgUGCUUG--GGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 17653 0.79 0.101113
Target:  5'- cGGCCGCCGCCACcgccGCCaCCGcCGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu--UGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 17681 0.66 0.600786
Target:  5'- cGGCCccggcggagaccgaGCCGCaCACGcaguacAUCCCCaCGCCg -3'
miRNA:   3'- cCCGG--------------CGGCG-GUGCu-----UGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 17970 0.73 0.266621
Target:  5'- cGGGCCGUgaGCCugGcGCCCaCgGcCGCCg -3'
miRNA:   3'- -CCCGGCGg-CGGugCuUGGG-GgC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 18253 0.66 0.612916
Target:  5'- cGGCCGaCCGgcgaCCGCGAGaugCgCgGCGCCg -3'
miRNA:   3'- cCCGGC-GGC----GGUGCUUg--GgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 18623 0.67 0.539037
Target:  5'- cGGCCGCC-CCuCcGACgCCCGCuccGCCg -3'
miRNA:   3'- cCCGGCGGcGGuGcUUGgGGGCG---CGG- -5'
10864 3' -65.2 NC_002794.1 + 18657 0.67 0.557287
Target:  5'- cGGGacgaCCGUCGCCGCuuccucGGCUgCCGcCGCCg -3'
miRNA:   3'- -CCC----GGCGGCGGUGc-----UUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 18816 0.66 0.622262
Target:  5'- cGGGUCggcgaccucgGCCGgCGCGGaggagACCUCgagCGCGCCg -3'
miRNA:   3'- -CCCGG----------CGGCgGUGCU-----UGGGG---GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 19255 0.72 0.272453
Target:  5'- -uGCCGaCCgGCCGCG-GCCCCCGUGgCg -3'
miRNA:   3'- ccCGGC-GG-CGGUGCuUGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 19315 0.72 0.290565
Target:  5'- --aCCGCCcacGCCGCGcuggcGACCCgCGCGCCg -3'
miRNA:   3'- cccGGCGG---CGGUGC-----UUGGGgGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 19464 0.67 0.539037
Target:  5'- cGGCgGCgGCgGCgGGACCCgCCGguCGCCc -3'
miRNA:   3'- cCCGgCGgCGgUG-CUUGGG-GGC--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 19889 0.7 0.372338
Target:  5'- uGGCCgaccGCUGCCGCGAGCacgaCCUGaccCGCCu -3'
miRNA:   3'- cCCGG----CGGCGGUGCUUGg---GGGC---GCGG- -5'
10864 3' -65.2 NC_002794.1 + 20167 0.67 0.529987
Target:  5'- uGGCgGCCccauaCCGCGAgaGCCCgCCGC-CCa -3'
miRNA:   3'- cCCGgCGGc----GGUGCU--UGGG-GGCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.