miRNA display CGI


Results 61 - 80 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 20216 0.78 0.111311
Target:  5'- -cGCCGaCCGCCAUGGcUCUCCGCGCCu -3'
miRNA:   3'- ccCGGC-GGCGGUGCUuGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 20347 0.73 0.244298
Target:  5'- cGGCUcaGCCGCUucgaGCuGGACCaCCUGCGCCg -3'
miRNA:   3'- cCCGG--CGGCGG----UG-CUUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 20414 0.68 0.503192
Target:  5'- gGGGCCa----CACGGucuaCCCCGCGCCg -3'
miRNA:   3'- -CCCGGcggcgGUGCUug--GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 21381 0.68 0.503192
Target:  5'- cGGCCGCCGUCucuuccuCGGACaCCgCCG-GCUc -3'
miRNA:   3'- cCCGGCGGCGGu------GCUUG-GG-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 21593 0.74 0.228592
Target:  5'- gGGGCgGUCuguGCC-CGuGACCCaCCGCGCCg -3'
miRNA:   3'- -CCCGgCGG---CGGuGC-UUGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 21955 0.72 0.303156
Target:  5'- aGGCCGUCgGCCGCu--CCCgCgGCGCCg -3'
miRNA:   3'- cCCGGCGG-CGGUGcuuGGG-GgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 22874 0.67 0.566479
Target:  5'- cGGCCGUCG-CGCGcuUCCCUG-GCCu -3'
miRNA:   3'- cCCGGCGGCgGUGCuuGGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 22997 0.66 0.60265
Target:  5'- cGGGCaaaCGCCGCCGgucuucgUGAGguccgUCCCCG-GCCc -3'
miRNA:   3'- -CCCG---GCGGCGGU-------GCUU-----GGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 23238 0.8 0.079342
Target:  5'- cGGGgCGuuGCCguGCGAGCCUCCGcCGCCg -3'
miRNA:   3'- -CCCgGCggCGG--UGCUUGGGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 23574 0.74 0.208988
Target:  5'- cGGuGCCGCCGCCACccgccGAUCCaCCGaucCGCCg -3'
miRNA:   3'- -CC-CGGCGGCGGUGc----UUGGG-GGC---GCGG- -5'
10864 3' -65.2 NC_002794.1 + 23947 0.68 0.503192
Target:  5'- cGGCCGCgGCgCAcuuggcucCGAGCCagcggcgaggCCgGCGCCa -3'
miRNA:   3'- cCCGGCGgCG-GU--------GCUUGG----------GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 24009 0.74 0.223549
Target:  5'- cGGGCCGCCGucaCCGCGGcGCCUCgGCGaCg -3'
miRNA:   3'- -CCCGGCGGC---GGUGCU-UGGGGgCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 24053 0.66 0.584975
Target:  5'- -cGuCCGcCCGCCcCGGACCacaCCCGUGCg -3'
miRNA:   3'- ccC-GGC-GGCGGuGCUUGG---GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 25653 0.67 0.539037
Target:  5'- cGGCCccGUCGCCACGA-CCgCCGaGCa -3'
miRNA:   3'- cCCGG--CGGCGGUGCUuGGgGGCgCGg -5'
10864 3' -65.2 NC_002794.1 + 27387 0.68 0.494391
Target:  5'- cGGGUCGaCCGaCCGgaugaccgcuCGAccgGCCgCCCGCGUCc -3'
miRNA:   3'- -CCCGGC-GGC-GGU----------GCU---UGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 28685 0.7 0.387403
Target:  5'- uGGCCGUCGCCGCcgccguuGCUgCUGCuGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcu-----UGGgGGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 28722 0.66 0.57571
Target:  5'- -cGCCGCCGuCCGacCGugUCCCCGagGCCc -3'
miRNA:   3'- ccCGGCGGC-GGU--GCuuGGGGGCg-CGG- -5'
10864 3' -65.2 NC_002794.1 + 30099 0.66 0.584975
Target:  5'- cGGCCGgucccgacccaCCGCC-CGGguuuucuccucACCCCCGUcCCg -3'
miRNA:   3'- cCCGGC-----------GGCGGuGCU-----------UGGGGGCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 31013 0.66 0.594267
Target:  5'- -cGUCGCCGCCGCcu-CCUCCGagcacaggGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuuGGGGGCg-------CGG- -5'
10864 3' -65.2 NC_002794.1 + 31396 0.79 0.103577
Target:  5'- cGGCC-CCGCCGC--GCCCgCCGCGCCc -3'
miRNA:   3'- cCCGGcGGCGGUGcuUGGG-GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.