miRNA display CGI


Results 81 - 100 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 31901 0.68 0.491764
Target:  5'- cGGCgCGUCGCUgAUGAGCgCCgacaggacguccagCCGCGCCg -3'
miRNA:   3'- cCCG-GCGGCGG-UGCUUG-GG--------------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 32296 0.79 0.106097
Target:  5'- -cGCCGCCGCCGCG-GCggCCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGCuUGggGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 32319 0.71 0.350498
Target:  5'- cGGCCGCgGCCGgaGAcaaGCCCuCCGCGaUCg -3'
miRNA:   3'- cCCGGCGgCGGUg-CU---UGGG-GGCGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 33039 0.66 0.603583
Target:  5'- cGGaGCCGaCGCCAuCGAcgugcuguUCCCCaCGCCg -3'
miRNA:   3'- -CC-CGGCgGCGGU-GCUu-------GGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 33456 0.73 0.255259
Target:  5'- cGGGCgGCCGCCggACGcGCCCaCGcCGCUg -3'
miRNA:   3'- -CCCGgCGGCGG--UGCuUGGGgGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 34051 0.74 0.223549
Target:  5'- cGGGCCGgcCCGCgCACG-ACCCgCCGUucccGCCg -3'
miRNA:   3'- -CCCGGC--GGCG-GUGCuUGGG-GGCG----CGG- -5'
10864 3' -65.2 NC_002794.1 + 34102 0.68 0.494391
Target:  5'- cGGGCgGCCcggaCCGCG-ACgUCCGCGaCCu -3'
miRNA:   3'- -CCCGgCGGc---GGUGCuUGgGGGCGC-GG- -5'
10864 3' -65.2 NC_002794.1 + 34251 0.74 0.208988
Target:  5'- cGGCUGCCGCCgcagGCGGACCgcgcgcaggcggCCaGCGCCa -3'
miRNA:   3'- cCCGGCGGCGG----UGCUUGG------------GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34327 0.69 0.451507
Target:  5'- aGGCCGuCCGCaagGCG-ACggCCGCGCCg -3'
miRNA:   3'- cCCGGC-GGCGg--UGCuUGggGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34734 0.77 0.14588
Target:  5'- cGGGCgGCCGCagagcgcgcgacggCGCGGugggacgcggcacgGCCgCCCGCGCCa -3'
miRNA:   3'- -CCCGgCGGCG--------------GUGCU--------------UGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34812 0.74 0.218602
Target:  5'- cGGGCCGCgCGaCACc-ACCCCCuCGCCg -3'
miRNA:   3'- -CCCGGCG-GCgGUGcuUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 34856 0.68 0.503192
Target:  5'- cGGaGCgGgCGCCGCGGGCgCCgCGgaCGCCg -3'
miRNA:   3'- -CC-CGgCgGCGGUGCUUG-GGgGC--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 34940 0.72 0.290565
Target:  5'- cGGCUGuccccggcCCGCCGCGA---CCCGCGCCu -3'
miRNA:   3'- cCCGGC--------GGCGGUGCUuggGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 35065 0.7 0.357676
Target:  5'- --aCCGCCGCUGCGugggcGCCCUgGUGCCc -3'
miRNA:   3'- cccGGCGGCGGUGCu----UGGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 35773 0.66 0.593337
Target:  5'- cGGCacCGUCGCCggcgucgucuccgGCGugaCCCUGCGCCc -3'
miRNA:   3'- cCCG--GCGGCGG-------------UGCuugGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 35829 1.11 0.000499
Target:  5'- cGGGCCGCCGCCACGAACCCCCGCGCCc -3'
miRNA:   3'- -CCCGGCGGCGGUGCUUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 36159 0.75 0.19974
Target:  5'- -cGCCGCCGCCucccccCCaCCCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGGugcuu-GG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 37540 0.66 0.57571
Target:  5'- uGGCgaacaGCCGCCGgagGGGCCacgaCCGCGUCu -3'
miRNA:   3'- cCCGg----CGGCGGUg--CUUGGg---GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 37605 0.69 0.43411
Target:  5'- uGGaGCCGCaccgagaaggugaCGUCGCGGACCCCguaGCCg -3'
miRNA:   3'- -CC-CGGCG-------------GCGGUGCUUGGGGgcgCGG- -5'
10864 3' -65.2 NC_002794.1 + 37790 0.69 0.443175
Target:  5'- cGGCCGCaggCGCCuCGAcgagacggucGCUCCCGcCGUCa -3'
miRNA:   3'- cCCGGCG---GCGGuGCU----------UGGGGGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.