miRNA display CGI


Results 101 - 120 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 37918 0.74 0.228592
Target:  5'- cGGCCucaacgucaaCCGCCGCG-GCCgCCCGUGCCu -3'
miRNA:   3'- cCCGGc---------GGCGGUGCuUGG-GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 38255 0.71 0.316162
Target:  5'- gGGGCCuCCuGCgugaggCGCG-GCCCCCGCGCg -3'
miRNA:   3'- -CCCGGcGG-CG------GUGCuUGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 38442 0.66 0.57571
Target:  5'- cGGGCCggacugaggaGCCGgCGCG-GCCgCggCGCGCCc -3'
miRNA:   3'- -CCCGG----------CGGCgGUGCuUGGgG--GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 38509 0.69 0.43493
Target:  5'- cGGUCGCCGCC----GCCUCCGCGa- -3'
miRNA:   3'- cCCGGCGGCGGugcuUGGGGGCGCgg -5'
10864 3' -65.2 NC_002794.1 + 38534 0.76 0.147948
Target:  5'- aGGUCGCCGCCGCcgccGCCUCCcCGCCa -3'
miRNA:   3'- cCCGGCGGCGGUGcu--UGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 38692 0.73 0.255259
Target:  5'- gGGGUCaCCGCCGCGccgucgagcGCCCCgGcCGCCg -3'
miRNA:   3'- -CCCGGcGGCGGUGCu--------UGGGGgC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 39542 0.66 0.584975
Target:  5'- gGGGCUGCUG-UGCG-GCCUCUGCGgCg -3'
miRNA:   3'- -CCCGGCGGCgGUGCuUGGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 39594 0.69 0.41074
Target:  5'- cGGGUCGCgGCCuCG-ACCUaCGCGCg -3'
miRNA:   3'- -CCCGGCGgCGGuGCuUGGGgGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 39648 0.67 0.566479
Target:  5'- --uUCGCCGCCugGGuggucuucGCCCucugCCGCGCg -3'
miRNA:   3'- cccGGCGGCGGugCU--------UGGG----GGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 40116 0.7 0.364956
Target:  5'- gGGGCgCGCgagagcggagaGCCACGGGCuCUCCGCGgCu -3'
miRNA:   3'- -CCCG-GCGg----------CGGUGCUUG-GGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 40282 0.83 0.050965
Target:  5'- cGGGUCGCCGCUACGcgUCCgUCGCGCCg -3'
miRNA:   3'- -CCCGGCGGCGGUGCuuGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 40504 0.67 0.512061
Target:  5'- -cGCCGCUcgaGUCACGGccGCCgaCGCGCCg -3'
miRNA:   3'- ccCGGCGG---CGGUGCU--UGGggGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 40547 0.74 0.213748
Target:  5'- gGGGCCGgCGgCAUGAGCUucucgUUCGCGCCg -3'
miRNA:   3'- -CCCGGCgGCgGUGCUUGG-----GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 41206 0.73 0.24376
Target:  5'- cGGcGCUGCUGCCACcGGCCUCCGgggauuccucccaCGCCg -3'
miRNA:   3'- -CC-CGGCGGCGGUGcUUGGGGGC-------------GCGG- -5'
10864 3' -65.2 NC_002794.1 + 41248 0.68 0.477003
Target:  5'- cGGCCGCCgacGCCgGCG-GCCCgucgUCGCGCUc -3'
miRNA:   3'- cCCGGCGG---CGG-UGCuUGGG----GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 41354 0.71 0.336453
Target:  5'- gGGGUCaCCGCCGuCG-GCCUUCGCGCUc -3'
miRNA:   3'- -CCCGGcGGCGGU-GCuUGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 41674 0.78 0.114008
Target:  5'- cGGGCCGCCG-CAgGAGCgCCCGgacCGCCg -3'
miRNA:   3'- -CCCGGCGGCgGUgCUUGgGGGC---GCGG- -5'
10864 3' -65.2 NC_002794.1 + 41907 0.73 0.238965
Target:  5'- -aGCaGCgCGCCACGAGCCCCuCGUggGCCa -3'
miRNA:   3'- ccCGgCG-GCGGUGCUUGGGG-GCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 43651 0.71 0.322151
Target:  5'- -cGCUGCCGCCGaacgagcCGGGCUCUCGgGCCc -3'
miRNA:   3'- ccCGGCGGCGGU-------GCUUGGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 43755 0.69 0.45067
Target:  5'- uGGGugccguuCCGCagcaGCCAgaucucgcCGAACgCCCCGCGUCc -3'
miRNA:   3'- -CCC-------GGCGg---CGGU--------GCUUG-GGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.