miRNA display CGI


Results 21 - 40 of 594 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 192828 0.67 0.539037
Target:  5'- aGGCCgGUCGCCAgGuagucGCCCaCCGaGCCc -3'
miRNA:   3'- cCCGG-CGGCGGUgCu----UGGG-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 192732 0.66 0.622262
Target:  5'- aGGUCGUCgGCCAgcCGGuACaCCUCGCGCUc -3'
miRNA:   3'- cCCGGCGG-CGGU--GCU-UG-GGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 192684 0.67 0.566479
Target:  5'- cGGCCGCCGUCguACGucuucAGCagCCCGCaCCg -3'
miRNA:   3'- cCCGGCGGCGG--UGC-----UUGg-GGGCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 192634 0.73 0.255259
Target:  5'- cGGGCgGCCGCUccagcCGcGCCgCCGCGCg -3'
miRNA:   3'- -CCCGgCGGCGGu----GCuUGGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 192437 0.69 0.402082
Target:  5'- cGGCCgGCgCGUCGCGcGCCUCgcagucgCGCGCCa -3'
miRNA:   3'- cCCGG-CG-GCGGUGCuUGGGG-------GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 192365 0.76 0.160176
Target:  5'- -cGCCGCCGCCGacCGAGCgcgggcugaccgccaCCgCCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGU--GCUUG---------------GG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 192326 0.67 0.509394
Target:  5'- -cGCCGCCGCCgcuuccuccucuucGCGGACCUCgGC-CUc -3'
miRNA:   3'- ccCGGCGGCGG--------------UGCUUGGGGgCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 191491 0.7 0.375319
Target:  5'- cGGGCgauCGuCCGCCAcCGAgagguGCCagcgccgggcgucggCCCGCGCCu -3'
miRNA:   3'- -CCCG---GC-GGCGGU-GCU-----UGG---------------GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 190678 0.66 0.594267
Target:  5'- -cGCCGCCGggucuCCACGcacACCuCCCgGCGCa -3'
miRNA:   3'- ccCGGCGGC-----GGUGCu--UGG-GGG-CGCGg -5'
10864 3' -65.2 NC_002794.1 + 190561 0.7 0.379068
Target:  5'- -cGUCGCCGacagcaCCGCGAacggguaGCUCUCGCGCCg -3'
miRNA:   3'- ccCGGCGGC------GGUGCU-------UGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 190483 0.66 0.591476
Target:  5'- cGGGUgccccaCGCCGCCcaggagauaccacgGCGuGCCCagccgCGUGCCg -3'
miRNA:   3'- -CCCG------GCGGCGG--------------UGCuUGGGg----GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 190362 0.67 0.520994
Target:  5'- cGGCCGCgcggCGCaGCGGguGCUCCCGCuCCu -3'
miRNA:   3'- cCCGGCG----GCGgUGCU--UGGGGGCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 190160 0.71 0.316162
Target:  5'- uGGCgGCgGCUcuccuCGAacACCCgCCGCGCCa -3'
miRNA:   3'- cCCGgCGgCGGu----GCU--UGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 189939 0.69 0.406003
Target:  5'- cGGCCGCCGauggaCCcggacggaccgacggACGGGCCgCCCGCucGCCc -3'
miRNA:   3'- cCCGGCGGC-----GG---------------UGCUUGG-GGGCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 189895 0.79 0.098704
Target:  5'- cGGGCCcgccgucagcGCCGCCGCGcGACCgCCCGCucGCCc -3'
miRNA:   3'- -CCCGG----------CGGCGGUGC-UUGG-GGGCG--CGG- -5'
10864 3' -65.2 NC_002794.1 + 189867 0.66 0.603583
Target:  5'- cGGcGUCGUCGCCGCcGACCggCCCGCu-- -3'
miRNA:   3'- -CC-CGGCGGCGGUGcUUGG--GGGCGcgg -5'
10864 3' -65.2 NC_002794.1 + 189782 0.72 0.271866
Target:  5'- -aGCCGCgggaugcggaaauCGCCGuCGAACCCCggcgggCGCGCCa -3'
miRNA:   3'- ccCGGCG-------------GCGGU-GCUUGGGG------GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 189586 0.67 0.529987
Target:  5'- cGGGCCGgCGCCccuuAGCCCguCCGC-CCg -3'
miRNA:   3'- -CCCGGCgGCGGugc-UUGGG--GGCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 189139 0.73 0.244298
Target:  5'- gGGGCCGCCagcGCCA-GAcuCUCCCGCGgCa -3'
miRNA:   3'- -CCCGGCGG---CGGUgCUu-GGGGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 189051 0.69 0.41074
Target:  5'- cGGGCUGCgCGUCGCGuacgGCgUCUCGgGCCg -3'
miRNA:   3'- -CCCGGCG-GCGGUGCu---UG-GGGGCgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.