miRNA display CGI


Results 41 - 60 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 188591 0.68 0.459924
Target:  5'- -cGCCGCU-CCACGGcCgCCuuGCGCCg -3'
miRNA:   3'- ccCGGCGGcGGUGCUuG-GGggCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 188411 0.72 0.272453
Target:  5'- cGGGaCCGCCGCCGC-AACUgCCGCa-- -3'
miRNA:   3'- -CCC-GGCGGCGGUGcUUGGgGGCGcgg -5'
10864 3' -65.2 NC_002794.1 + 188334 0.77 0.131506
Target:  5'- -cGCCGCCGCCgGCGGcGCCgUCGCGCCc -3'
miRNA:   3'- ccCGGCGGCGG-UGCU-UGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 188291 0.69 0.443175
Target:  5'- aGGG-CGCCGCgCGcCGGACCcggCCCGuCGUCg -3'
miRNA:   3'- -CCCgGCGGCG-GU-GCUUGG---GGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 187921 0.8 0.089601
Target:  5'- cGGGCC-CCGCCGCG-ACCgUCGCGUCa -3'
miRNA:   3'- -CCCGGcGGCGGUGCuUGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187741 0.69 0.41074
Target:  5'- cGGCacCGUCGCCAucucCGAacGCCgCCgGCGCCg -3'
miRNA:   3'- cCCG--GCGGCGGU----GCU--UGG-GGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187704 0.68 0.459924
Target:  5'- uGGCCGucuCCGUCACGGGCCgCaacaCGCCg -3'
miRNA:   3'- cCCGGC---GGCGGUGCUUGGgGgc--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 187591 0.81 0.073736
Target:  5'- cGGCCGCCGUCGCGAcgCCCgGCGUCg -3'
miRNA:   3'- cCCGGCGGCGGUGCUugGGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187536 0.74 0.223549
Target:  5'- --cCCGCCGCCGCGAccGCCgccaCCGcCGCCg -3'
miRNA:   3'- cccGGCGGCGGUGCU--UGGg---GGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 187455 0.68 0.494391
Target:  5'- -uGCCGCCGCUcgGCGucGCUCggcgCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGG--UGCu-UGGGg---GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 187266 0.67 0.566479
Target:  5'- -uGCCGCuCGCgCGucuCGAACa-CCGCGCCg -3'
miRNA:   3'- ccCGGCG-GCG-GU---GCUUGggGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 186964 0.68 0.494391
Target:  5'- uGGCCGCCGCCuCcAGCagCgCGCGCa -3'
miRNA:   3'- cCCGGCGGCGGuGcUUGg-GgGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 186939 0.84 0.041785
Target:  5'- --aCCGCCGCCACG-GCCCCCGgGCCg -3'
miRNA:   3'- cccGGCGGCGGUGCuUGGGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 186724 0.72 0.272453
Target:  5'- -cGUCGCUGCUAUagcuGCCCaCCGCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcu--UGGG-GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 186650 0.68 0.477003
Target:  5'- cGGGUCgGCCG-CGCGcACCCCguacacgGCGCCc -3'
miRNA:   3'- -CCCGG-CGGCgGUGCuUGGGGg------CGCGG- -5'
10864 3' -65.2 NC_002794.1 + 186490 0.7 0.372338
Target:  5'- aGGGCC-CgGCgGCGcGCCUCCcCGCCg -3'
miRNA:   3'- -CCCGGcGgCGgUGCuUGGGGGcGCGG- -5'
10864 3' -65.2 NC_002794.1 + 186368 0.73 0.249729
Target:  5'- -aGCCGCCGCCGCc-GCCgUCGuCGCCg -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 186110 0.7 0.382841
Target:  5'- -cGUCGCCGCCGcCGggUCCCCGgaucuccagcacggcCGUCa -3'
miRNA:   3'- ccCGGCGGCGGU-GCuuGGGGGC---------------GCGG- -5'
10864 3' -65.2 NC_002794.1 + 186080 0.71 0.316162
Target:  5'- -cGCCGCCGCCuucgcCGGGCgCUUCGuCGCCg -3'
miRNA:   3'- ccCGGCGGCGGu----GCUUG-GGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 186005 0.72 0.284425
Target:  5'- cGGGCucCGCCGCUcCGGGCCcgggcccggaCCCGgGCCc -3'
miRNA:   3'- -CCCG--GCGGCGGuGCUUGG----------GGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.