miRNA display CGI


Results 61 - 80 of 594 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 185916 0.68 0.503192
Target:  5'- cGGGCCcCuCGCCACcgccGGCCaCCCGCcaggcucgcgGCCg -3'
miRNA:   3'- -CCCGGcG-GCGGUGc---UUGG-GGGCG----------CGG- -5'
10864 3' -65.2 NC_002794.1 + 185760 0.69 0.426774
Target:  5'- -aGCCGCCGgCGCG-GCCgCCCGUcacacgucgGCCg -3'
miRNA:   3'- ccCGGCGGCgGUGCuUGG-GGGCG---------CGG- -5'
10864 3' -65.2 NC_002794.1 + 185553 0.67 0.512061
Target:  5'- cGGCCGCgCGCCcCGccCUgCCGCGgCa -3'
miRNA:   3'- cCCGGCG-GCGGuGCuuGGgGGCGCgG- -5'
10864 3' -65.2 NC_002794.1 + 185474 0.71 0.328904
Target:  5'- cGGGCgGCgGCCGCGGcgaggggaccGCCUauauauucgaucuCCGCGUCg -3'
miRNA:   3'- -CCCGgCGgCGGUGCU----------UGGG-------------GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 185410 0.67 0.566479
Target:  5'- cGGGcCCGaCCGCCGuCGAcucgaCgCgGCGCCa -3'
miRNA:   3'- -CCC-GGC-GGCGGU-GCUug---GgGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 185351 0.69 0.402864
Target:  5'- -cGCgCGCCGCCGCGAGCgggCCGaaCGCCg -3'
miRNA:   3'- ccCG-GCGGCGGUGCUUGgg-GGC--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 185284 0.69 0.451507
Target:  5'- uGGGCCGCCGgaCAgGucagcACCaCCCGguCGCCc -3'
miRNA:   3'- -CCCGGCGGCg-GUgCu----UGG-GGGC--GCGG- -5'
10864 3' -65.2 NC_002794.1 + 185212 0.68 0.48566
Target:  5'- cGGCuCG-CGCCGCGGagagucgcgccgACCgCCGCGCa -3'
miRNA:   3'- cCCG-GCgGCGGUGCU------------UGGgGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 185060 0.67 0.512061
Target:  5'- uGGUCugcaGCCGCCGCGG---CCCGuCGCCg -3'
miRNA:   3'- cCCGG----CGGCGGUGCUuggGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 184945 0.67 0.539037
Target:  5'- -uGCCGCaGCUGCGccGGCCCgCGCaGCCg -3'
miRNA:   3'- ccCGGCGgCGGUGC--UUGGGgGCG-CGG- -5'
10864 3' -65.2 NC_002794.1 + 184704 0.67 0.529987
Target:  5'- aGGGUCGuCCGUCggcucuuccgaGCGAcaggccaacGCCagguCCGCGCCg -3'
miRNA:   3'- -CCCGGC-GGCGG-----------UGCU---------UGGg---GGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 184532 0.74 0.208988
Target:  5'- cGGGCgacgccgcccacCGCCGCCucuuCGGacGCCUCaCGCGCCg -3'
miRNA:   3'- -CCCG------------GCGGCGGu---GCU--UGGGG-GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 184490 0.73 0.255259
Target:  5'- gGGGCCccggaCGCCcgggcggcGCGGGCCCCgCGCGCg -3'
miRNA:   3'- -CCCGGcg---GCGG--------UGCUUGGGG-GCGCGg -5'
10864 3' -65.2 NC_002794.1 + 184457 0.67 0.566479
Target:  5'- -cGCUGCCGcCCGCGGGCCgcgcgaaCgGCGCg -3'
miRNA:   3'- ccCGGCGGC-GGUGCUUGGg------GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 184293 0.69 0.41074
Target:  5'- cGGCCGCCGCC-----UCCCCGUcCCa -3'
miRNA:   3'- cCCGGCGGCGGugcuuGGGGGCGcGG- -5'
10864 3' -65.2 NC_002794.1 + 184058 0.66 0.60265
Target:  5'- cGGGCCGCgGCgaagcggCACGcGCCCaCgGUGUa -3'
miRNA:   3'- -CCCGGCGgCG-------GUGCuUGGG-GgCGCGg -5'
10864 3' -65.2 NC_002794.1 + 184021 0.71 0.329585
Target:  5'- -cGCCgGCCGCCACG-GCaCCgCGCGCa -3'
miRNA:   3'- ccCGG-CGGCGGUGCuUG-GGgGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 183935 0.73 0.255259
Target:  5'- aGGGUCaCCGCCACGAACgucgacgcgguCCCCGUcacGCUg -3'
miRNA:   3'- -CCCGGcGGCGGUGCUUG-----------GGGGCG---CGG- -5'
10864 3' -65.2 NC_002794.1 + 183889 0.73 0.249729
Target:  5'- -cGCCGCCGUCACc-GCCgCCGaCGCCa -3'
miRNA:   3'- ccCGGCGGCGGUGcuUGGgGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 183752 0.67 0.515627
Target:  5'- aGGCCGcCCGCCACGAagaacgucgucgacaGCagcaucucggCCCC-CGUCa -3'
miRNA:   3'- cCCGGC-GGCGGUGCU---------------UG----------GGGGcGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.