miRNA display CGI


Results 81 - 100 of 594 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 3' -65.2 NC_002794.1 + 183707 0.67 0.557287
Target:  5'- cGGCgGCacaGCCACaccgucAGCCCgCaCGCGCCc -3'
miRNA:   3'- cCCGgCGg--CGGUGc-----UUGGG-G-GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183650 0.78 0.122467
Target:  5'- aGGGCCGCCuucuCCGCGccgGGCCCgaGCGCCg -3'
miRNA:   3'- -CCCGGCGGc---GGUGC---UUGGGggCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183608 0.86 0.035094
Target:  5'- gGGGCCGCgCGCgGcCGGcGCCCCCGCGCCc -3'
miRNA:   3'- -CCCGGCG-GCGgU-GCU-UGGGGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183528 0.66 0.57571
Target:  5'- cGGCCGugcgcgccccguCCGcCCGgGGACaCUgCGCGCCg -3'
miRNA:   3'- cCCGGC------------GGC-GGUgCUUG-GGgGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 183462 0.76 0.151453
Target:  5'- cGGcGcCCGcCCGCCGCGAguccgcggcccgAUCCCCGCGCg -3'
miRNA:   3'- -CC-C-GGC-GGCGGUGCU------------UGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 183250 0.68 0.476142
Target:  5'- cGGCgGcCCGCCAcuCGGuacaguacagccaGCCCaCCGCGCg -3'
miRNA:   3'- cCCGgC-GGCGGU--GCU-------------UGGG-GGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 183166 0.7 0.394312
Target:  5'- cGGGCUGCCcgagccgGUCGgGGACCgagaCGCGCCg -3'
miRNA:   3'- -CCCGGCGG-------CGGUgCUUGGgg--GCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 182992 0.82 0.065228
Target:  5'- cGGCCGgcgcuUCGCCGCGGGCgCCCCGCGCg -3'
miRNA:   3'- cCCGGC-----GGCGGUGCUUG-GGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 182558 0.69 0.41074
Target:  5'- cGGCCGgcaCCGUCACcgGGAUCUCCGUGCg -3'
miRNA:   3'- cCCGGC---GGCGGUG--CUUGGGGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 182032 0.7 0.357676
Target:  5'- cGGGCCGCCGgCGaccaGACCagguCCUGCGCg -3'
miRNA:   3'- -CCCGGCGGCgGUgc--UUGG----GGGCGCGg -5'
10864 3' -65.2 NC_002794.1 + 181775 0.66 0.584975
Target:  5'- uGGcGCCgcGCCGCCGCGucuCgUUCGgGCCu -3'
miRNA:   3'- -CC-CGG--CGGCGGUGCuu-GgGGGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 181653 0.7 0.397408
Target:  5'- cGGGaagaaaaCCGCgGUguacacguuggugugCGCGGACCgCCGCGCCu -3'
miRNA:   3'- -CCC-------GGCGgCG---------------GUGCUUGGgGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 181586 0.68 0.494391
Target:  5'- aGGCUGCgGgCCGCGAccggguCgCCCCGuUGCCg -3'
miRNA:   3'- cCCGGCGgC-GGUGCUu-----G-GGGGC-GCGG- -5'
10864 3' -65.2 NC_002794.1 + 181533 0.66 0.622262
Target:  5'- -cGcCCGCCGCCgGCGGGCCggcgcucucgguCgCCGgGCCa -3'
miRNA:   3'- ccC-GGCGGCGG-UGCUUGG------------G-GGCgCGG- -5'
10864 3' -65.2 NC_002794.1 + 181448 0.72 0.278388
Target:  5'- gGGGCCGCC-CgGaGGACgucuuaCCCGCGCCg -3'
miRNA:   3'- -CCCGGCGGcGgUgCUUGg-----GGGCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 181409 0.75 0.190851
Target:  5'- cGGCCGCCGCCACc-GCCauguCCGCgaaGCCg -3'
miRNA:   3'- cCCGGCGGCGGUGcuUGGg---GGCG---CGG- -5'
10864 3' -65.2 NC_002794.1 + 181277 0.68 0.468424
Target:  5'- -aGCCGagguaCGCCGCGAacaccACCCCCaG-GCCg -3'
miRNA:   3'- ccCGGCg----GCGGUGCU-----UGGGGG-CgCGG- -5'
10864 3' -65.2 NC_002794.1 + 180899 0.71 0.350498
Target:  5'- cGGCCGCggacucgGCCGCGGucuCgCCgGCGCCg -3'
miRNA:   3'- cCCGGCGg------CGGUGCUu--GgGGgCGCGG- -5'
10864 3' -65.2 NC_002794.1 + 180782 0.66 0.57571
Target:  5'- cGGGCgGUgGCCGgGGAUCUCCGUuugaGCg -3'
miRNA:   3'- -CCCGgCGgCGGUgCUUGGGGGCG----CGg -5'
10864 3' -65.2 NC_002794.1 + 180664 0.66 0.611982
Target:  5'- aGGGCgugccggggaacuCGCCgGCCGC---UCCCgGCGCCc -3'
miRNA:   3'- -CCCG-------------GCGG-CGGUGcuuGGGGgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.