miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 5' -51.7 NC_002794.1 + 142185 0.66 0.996847
Target:  5'- aGCG-CGAG-GAGCGGcaguGCGGGaAGcGGCg -3'
miRNA:   3'- -UGCuGCUCuCUUGCU----UGCUC-UCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 178047 0.66 0.996847
Target:  5'- cUGACGGGuGGAGacuggaaGAGCGAGGGAuccgGGUg -3'
miRNA:   3'- uGCUGCUC-UCUUg------CUUGCUCUCU----CCG- -5'
10864 5' -51.7 NC_002794.1 + 62484 0.66 0.996847
Target:  5'- uCGACGAGcgcGAGUGGACGGcGGGcGGCg -3'
miRNA:   3'- uGCUGCUCu--CUUGCUUGCU-CUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 63458 0.66 0.996847
Target:  5'- gGCGGCGAcGAuGACGA-CGAG-GcGGCg -3'
miRNA:   3'- -UGCUGCU-CUcUUGCUuGCUCuCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 130148 0.66 0.996847
Target:  5'- cGCGGCGcGAGcGCGGgaucacgcgcGCGAGAGccGCc -3'
miRNA:   3'- -UGCUGCuCUCuUGCU----------UGCUCUCucCG- -5'
10864 5' -51.7 NC_002794.1 + 100218 0.66 0.996847
Target:  5'- uCGACGAGGGcguCGAGgucuuCGAGGucGGCg -3'
miRNA:   3'- uGCUGCUCUCuu-GCUU-----GCUCUcuCCG- -5'
10864 5' -51.7 NC_002794.1 + 67934 0.66 0.996847
Target:  5'- aGCGACGGGGcGAuggccuCGAcCGAG-GAcGGCg -3'
miRNA:   3'- -UGCUGCUCU-CUu-----GCUuGCUCuCU-CCG- -5'
10864 5' -51.7 NC_002794.1 + 99559 0.66 0.996847
Target:  5'- cGCGcGCGcccuccGCGGGCGAGGGGGGUg -3'
miRNA:   3'- -UGC-UGCucucu-UGCUUGCUCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 154452 0.66 0.996847
Target:  5'- cACGACGcGA-AGCG-ACGA-AGAGGCg -3'
miRNA:   3'- -UGCUGCuCUcUUGCuUGCUcUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 441 0.66 0.996307
Target:  5'- cGCGAauugccccCGGGGGGAUGucuuUGGGGGGGGUu -3'
miRNA:   3'- -UGCU--------GCUCUCUUGCuu--GCUCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 185244 0.66 0.996307
Target:  5'- cGCGcACGAGAGAaagcgccaGCGGACGccgccggccGAGuGGGCc -3'
miRNA:   3'- -UGC-UGCUCUCU--------UGCUUGCu--------CUC-UCCG- -5'
10864 5' -51.7 NC_002794.1 + 37752 0.66 0.996307
Target:  5'- gGCGGCGcGGcGGCGccGGCGGGAGcGGCc -3'
miRNA:   3'- -UGCUGCuCUcUUGC--UUGCUCUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 107135 0.66 0.996131
Target:  5'- cGCGACGGGA--ACGAcgucggcgcccccgGCGAGGGccGCc -3'
miRNA:   3'- -UGCUGCUCUcuUGCU--------------UGCUCUCucCG- -5'
10864 5' -51.7 NC_002794.1 + 116022 0.66 0.996131
Target:  5'- gGCGAUuggcgcggggaccgGAGAGGA-GAGCGcAGGGGGGa -3'
miRNA:   3'- -UGCUG--------------CUCUCUUgCUUGC-UCUCUCCg -5'
10864 5' -51.7 NC_002794.1 + 91132 0.66 0.996131
Target:  5'- uGCGugGAgGAGGcGCGGACGGuGcugcugggcgccguGGAGGCc -3'
miRNA:   3'- -UGCugCU-CUCU-UGCUUGCU-C--------------UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 187669 0.66 0.995694
Target:  5'- cACGACGAucGGGCGAuGCGGgucGAGcGGCc -3'
miRNA:   3'- -UGCUGCUcuCUUGCU-UGCU---CUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 145494 0.66 0.995694
Target:  5'- cGCGAgGAuGAGGcguGCGAAgGGGugcgcGAGGCc -3'
miRNA:   3'- -UGCUgCU-CUCU---UGCUUgCUCu----CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 126766 0.66 0.995694
Target:  5'- aACGugG-GGGAACGGAaaaAGAcGAGGUc -3'
miRNA:   3'- -UGCugCuCUCUUGCUUgc-UCU-CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 138685 0.66 0.995694
Target:  5'- gGCGGCGGGucguGAuGCaAAUGAGGGcGGCg -3'
miRNA:   3'- -UGCUGCUCu---CU-UGcUUGCUCUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 141780 0.66 0.994999
Target:  5'- gACGACGAGccguccGACGGGCGcGGGucGGCc -3'
miRNA:   3'- -UGCUGCUCuc----UUGCUUGCuCUCu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.