miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 5' -51.7 NC_002794.1 + 130148 0.66 0.996847
Target:  5'- cGCGGCGcGAGcGCGGgaucacgcgcGCGAGAGccGCc -3'
miRNA:   3'- -UGCUGCuCUCuUGCU----------UGCUCUCucCG- -5'
10864 5' -51.7 NC_002794.1 + 63458 0.66 0.996847
Target:  5'- gGCGGCGAcGAuGACGA-CGAG-GcGGCg -3'
miRNA:   3'- -UGCUGCU-CUcUUGCUuGCUCuCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 441 0.66 0.996307
Target:  5'- cGCGAauugccccCGGGGGGAUGucuuUGGGGGGGGUu -3'
miRNA:   3'- -UGCU--------GCUCUCUUGCuu--GCUCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 185244 0.66 0.996307
Target:  5'- cGCGcACGAGAGAaagcgccaGCGGACGccgccggccGAGuGGGCc -3'
miRNA:   3'- -UGC-UGCUCUCU--------UGCUUGCu--------CUC-UCCG- -5'
10864 5' -51.7 NC_002794.1 + 37752 0.66 0.996307
Target:  5'- gGCGGCGcGGcGGCGccGGCGGGAGcGGCc -3'
miRNA:   3'- -UGCUGCuCUcUUGC--UUGCUCUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 178047 0.66 0.996847
Target:  5'- cUGACGGGuGGAGacuggaaGAGCGAGGGAuccgGGUg -3'
miRNA:   3'- uGCUGCUC-UCUUg------CUUGCUCUCU----CCG- -5'
10864 5' -51.7 NC_002794.1 + 62484 0.66 0.996847
Target:  5'- uCGACGAGcgcGAGUGGACGGcGGGcGGCg -3'
miRNA:   3'- uGCUGCUCu--CUUGCUUGCU-CUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 111725 0.67 0.992356
Target:  5'- uUGACGAGcGGGCGAACGcgcucgucGAGcuGGCg -3'
miRNA:   3'- uGCUGCUCuCUUGCUUGCu-------CUCu-CCG- -5'
10864 5' -51.7 NC_002794.1 + 42573 0.67 0.991262
Target:  5'- cGCGGCG-GAcccgcGGACGGAgGAGGGcgcGGCg -3'
miRNA:   3'- -UGCUGCuCU-----CUUGCUUgCUCUCu--CCG- -5'
10864 5' -51.7 NC_002794.1 + 110499 0.67 0.991262
Target:  5'- gGCGGCGccuGGAGAAaguCGGuCGAGAucGGCg -3'
miRNA:   3'- -UGCUGC---UCUCUU---GCUuGCUCUcuCCG- -5'
10864 5' -51.7 NC_002794.1 + 34293 0.67 0.992356
Target:  5'- aGCGAcCGGGAGcucuACGAcuccuCGAcccGGGAGGCc -3'
miRNA:   3'- -UGCU-GCUCUCu---UGCUu----GCU---CUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 145938 0.67 0.992356
Target:  5'- cCGGCGAGA--GCGGuuCGGGAGucGCg -3'
miRNA:   3'- uGCUGCUCUcuUGCUu-GCUCUCucCG- -5'
10864 5' -51.7 NC_002794.1 + 139829 0.67 0.993245
Target:  5'- gACGACGAagaccaaGAGGuUGAGCG--GGAGGCc -3'
miRNA:   3'- -UGCUGCU-------CUCUuGCUUGCucUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 10366 0.67 0.993245
Target:  5'- uCGACGGuGGAuccgcacuagccgACGAuCGAgGGGAGGCg -3'
miRNA:   3'- uGCUGCUcUCU-------------UGCUuGCU-CUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 101619 0.67 0.992958
Target:  5'- -gGGCGGGGGugccguuucguccGCGAGCGuGGGcGGGCg -3'
miRNA:   3'- ugCUGCUCUCu------------UGCUUGCuCUC-UCCG- -5'
10864 5' -51.7 NC_002794.1 + 155733 0.67 0.993245
Target:  5'- -gGAUGcAGAGAuugauacgcGCGAgauguugGCGGGAGAGGg -3'
miRNA:   3'- ugCUGC-UCUCU---------UGCU-------UGCUCUCUCCg -5'
10864 5' -51.7 NC_002794.1 + 95789 0.67 0.993338
Target:  5'- -gGGCGAGAGGcgcgGCGGAgGAaccGGGGGaGCg -3'
miRNA:   3'- ugCUGCUCUCU----UGCUUgCU---CUCUC-CG- -5'
10864 5' -51.7 NC_002794.1 + 94786 0.67 0.993338
Target:  5'- -gGGCGAGuucGAGCGGcACGGG-GAuGGCa -3'
miRNA:   3'- ugCUGCUCu--CUUGCU-UGCUCuCU-CCG- -5'
10864 5' -51.7 NC_002794.1 + 60483 0.67 0.993338
Target:  5'- cGCGGCGAcacgGAGAuccaguacgucuGCGucGACGgcacGGAGGGGCu -3'
miRNA:   3'- -UGCUGCU----CUCU------------UGC--UUGC----UCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 4158 0.67 0.991262
Target:  5'- gACGACGAGGGuaggggucgucGCGGugGGucgucGAGGCa -3'
miRNA:   3'- -UGCUGCUCUCu----------UGCUugCUcu---CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.