miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 5' -51.7 NC_002794.1 + 95891 0.73 0.849282
Target:  5'- gGCGGCGAGGGcgcacGACGugguGCGGGAGGuGCa -3'
miRNA:   3'- -UGCUGCUCUC-----UUGCu---UGCUCUCUcCG- -5'
10864 5' -51.7 NC_002794.1 + 92298 0.73 0.849282
Target:  5'- gGCGACGAGGcGGggcugggcGCGGGCGGcGGGGGCc -3'
miRNA:   3'- -UGCUGCUCU-CU--------UGCUUGCUcUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 182289 0.73 0.857118
Target:  5'- cAUGACGGGGcGggUGGACGGGcAGAcgGGCg -3'
miRNA:   3'- -UGCUGCUCU-CuuGCUUGCUC-UCU--CCG- -5'
10864 5' -51.7 NC_002794.1 + 55290 0.73 0.860196
Target:  5'- gGCGACGAGGGcggcggcggcgucgcGGCGGGCGcGGGcGGCu -3'
miRNA:   3'- -UGCUGCUCUC---------------UUGCUUGCuCUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 182336 0.73 0.864751
Target:  5'- -gGGCGGGcGAGCGGACGGGc-GGGCg -3'
miRNA:   3'- ugCUGCUCuCUUGCUUGCUCucUCCG- -5'
10864 5' -51.7 NC_002794.1 + 109168 0.73 0.872175
Target:  5'- gGCGACGAGc-GGCGGuaGCGGcGGAGGCa -3'
miRNA:   3'- -UGCUGCUCucUUGCU--UGCUcUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 89319 0.73 0.872175
Target:  5'- aACGGuCGAGAGAACGGggacgcggcgGCGAGAccuccGAGGa -3'
miRNA:   3'- -UGCU-GCUCUCUUGCU----------UGCUCU-----CUCCg -5'
10864 5' -51.7 NC_002794.1 + 146743 0.73 0.879383
Target:  5'- gACGACGGGcc-GCGGAuCGGGGGAGGg -3'
miRNA:   3'- -UGCUGCUCucuUGCUU-GCUCUCUCCg -5'
10864 5' -51.7 NC_002794.1 + 128096 0.72 0.886371
Target:  5'- gGCGACG-GGGAGCucGACGGGGGGcucGGCg -3'
miRNA:   3'- -UGCUGCuCUCUUGc-UUGCUCUCU---CCG- -5'
10864 5' -51.7 NC_002794.1 + 142332 0.72 0.886371
Target:  5'- gGCGGCG-GAGGcgGCGGagGCGGcGGAGGCg -3'
miRNA:   3'- -UGCUGCuCUCU--UGCU--UGCUcUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 64693 0.72 0.886371
Target:  5'- gACGGCGAGGcGAgcGCGGACGAGGacgacgacgacGAGGa -3'
miRNA:   3'- -UGCUGCUCU-CU--UGCUUGCUCU-----------CUCCg -5'
10864 5' -51.7 NC_002794.1 + 139991 0.72 0.899669
Target:  5'- cGCGACGc-GGGACGGuGCGGGuGGAGGCc -3'
miRNA:   3'- -UGCUGCucUCUUGCU-UGCUC-UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 140041 0.72 0.912039
Target:  5'- gGCGGCGGGAGAcACGGAa---AGGGGCu -3'
miRNA:   3'- -UGCUGCUCUCU-UGCUUgcucUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 105821 0.72 0.912039
Target:  5'- cGCGAcCGGGucggucGAGCGAGCGGGAccGAGGg -3'
miRNA:   3'- -UGCU-GCUCu-----CUUGCUUGCUCU--CUCCg -5'
10864 5' -51.7 NC_002794.1 + 94051 0.71 0.91787
Target:  5'- gGCGGCGGugcGGGGGCG-GCGGGGGgcgaGGGCa -3'
miRNA:   3'- -UGCUGCU---CUCUUGCuUGCUCUC----UCCG- -5'
10864 5' -51.7 NC_002794.1 + 44304 0.71 0.91787
Target:  5'- cCGGCGAGgcggGGAGCGAccGCGAGcGcGGCg -3'
miRNA:   3'- uGCUGCUC----UCUUGCU--UGCUCuCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 133135 0.71 0.91787
Target:  5'- gACGGCGAGAGAuCGuGCGAGAucuGCg -3'
miRNA:   3'- -UGCUGCUCUCUuGCuUGCUCUcucCG- -5'
10864 5' -51.7 NC_002794.1 + 110415 0.71 0.925633
Target:  5'- cCGGCGAGAGAAgcCGGGCGgcugucgucgucgguGGcGGAGGCc -3'
miRNA:   3'- uGCUGCUCUCUU--GCUUGC---------------UC-UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 72422 0.71 0.928816
Target:  5'- cGCGGCG-GAGGAgGAGCcggcgGAGGGAccGGCg -3'
miRNA:   3'- -UGCUGCuCUCUUgCUUG-----CUCUCU--CCG- -5'
10864 5' -51.7 NC_002794.1 + 153024 0.71 0.928816
Target:  5'- gGCGACGGGgacgGGAACGAcGCGGGucccucGGGCg -3'
miRNA:   3'- -UGCUGCUC----UCUUGCU-UGCUCuc----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.