Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10864 | 5' | -51.7 | NC_002794.1 | + | 38138 | 0.66 | 0.994999 |
Target: 5'- gGCGugGAGu---CGAGCaGGAGguAGGCg -3' miRNA: 3'- -UGCugCUCucuuGCUUGcUCUC--UCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 123413 | 0.66 | 0.994999 |
Target: 5'- gGCGugGAGu--ACGAcaGCGAc-GAGGCg -3' miRNA: 3'- -UGCugCUCucuUGCU--UGCUcuCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 141780 | 0.66 | 0.994999 |
Target: 5'- gACGACGAGccguccGACGGGCGcGGGucGGCc -3' miRNA: 3'- -UGCUGCUCuc----UUGCUUGCuCUCu-CCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 156047 | 0.66 | 0.994999 |
Target: 5'- cGCGACGGGGGcagccguguCGAAU-AGAGcGGGCg -3' miRNA: 3'- -UGCUGCUCUCuu-------GCUUGcUCUC-UCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 177951 | 0.66 | 0.994925 |
Target: 5'- uCGGCGAGGucgguGGACGGugGuGgacgguuGGAGGCu -3' miRNA: 3'- uGCUGCUCU-----CUUGCUugCuC-------UCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 58070 | 0.66 | 0.994217 |
Target: 5'- gGCGGCGGcGGGACGGGCGGccc-GGCg -3' miRNA: 3'- -UGCUGCUcUCUUGCUUGCUcucuCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 96547 | 0.66 | 0.994133 |
Target: 5'- cCGACGAaccggucGAcGAgGAGCGGGAGcGGCu -3' miRNA: 3'- uGCUGCU-------CUcUUgCUUGCUCUCuCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 138599 | 0.67 | 0.993338 |
Target: 5'- cGCGGCG-GAGAGCGGcuuUGuGAGucGCg -3' miRNA: 3'- -UGCUGCuCUCUUGCUu--GCuCUCucCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 60483 | 0.67 | 0.993338 |
Target: 5'- cGCGGCGAcacgGAGAuccaguacgucuGCGucGACGgcacGGAGGGGCu -3' miRNA: 3'- -UGCUGCU----CUCU------------UGC--UUGC----UCUCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 94786 | 0.67 | 0.993338 |
Target: 5'- -gGGCGAGuucGAGCGGcACGGG-GAuGGCa -3' miRNA: 3'- ugCUGCUCu--CUUGCU-UGCUCuCU-CCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 95789 | 0.67 | 0.993338 |
Target: 5'- -gGGCGAGAGGcgcgGCGGAgGAaccGGGGGaGCg -3' miRNA: 3'- ugCUGCUCUCU----UGCUUgCU---CUCUC-CG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 139829 | 0.67 | 0.993245 |
Target: 5'- gACGACGAagaccaaGAGGuUGAGCG--GGAGGCc -3' miRNA: 3'- -UGCUGCU-------CUCUuGCUUGCucUCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 10366 | 0.67 | 0.993245 |
Target: 5'- uCGACGGuGGAuccgcacuagccgACGAuCGAgGGGAGGCg -3' miRNA: 3'- uGCUGCUcUCU-------------UGCUuGCU-CUCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 155733 | 0.67 | 0.993245 |
Target: 5'- -gGAUGcAGAGAuugauacgcGCGAgauguugGCGGGAGAGGg -3' miRNA: 3'- ugCUGC-UCUCU---------UGCU-------UGCUCUCUCCg -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 101619 | 0.67 | 0.992958 |
Target: 5'- -gGGCGGGGGugccguuucguccGCGAGCGuGGGcGGGCg -3' miRNA: 3'- ugCUGCUCUCu------------UGCUUGCuCUC-UCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 145938 | 0.67 | 0.992356 |
Target: 5'- cCGGCGAGA--GCGGuuCGGGAGucGCg -3' miRNA: 3'- uGCUGCUCUcuUGCUu-GCUCUCucCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 34293 | 0.67 | 0.992356 |
Target: 5'- aGCGAcCGGGAGcucuACGAcuccuCGAcccGGGAGGCc -3' miRNA: 3'- -UGCU-GCUCUCu---UGCUu----GCU---CUCUCCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 111725 | 0.67 | 0.992356 |
Target: 5'- uUGACGAGcGGGCGAACGcgcucgucGAGcuGGCg -3' miRNA: 3'- uGCUGCUCuCUUGCUUGCu-------CUCu-CCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 42573 | 0.67 | 0.991262 |
Target: 5'- cGCGGCG-GAcccgcGGACGGAgGAGGGcgcGGCg -3' miRNA: 3'- -UGCUGCuCU-----CUUGCUUgCUCUCu--CCG- -5' |
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10864 | 5' | -51.7 | NC_002794.1 | + | 4158 | 0.67 | 0.991262 |
Target: 5'- gACGACGAGGGuaggggucgucGCGGugGGucgucGAGGCa -3' miRNA: 3'- -UGCUGCUCUCu----------UGCUugCUcu---CUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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