miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 5' -51.7 NC_002794.1 + 42573 0.67 0.991262
Target:  5'- cGCGGCG-GAcccgcGGACGGAgGAGGGcgcGGCg -3'
miRNA:   3'- -UGCUGCuCU-----CUUGCUUgCUCUCu--CCG- -5'
10864 5' -51.7 NC_002794.1 + 110499 0.67 0.991262
Target:  5'- gGCGGCGccuGGAGAAaguCGGuCGAGAucGGCg -3'
miRNA:   3'- -UGCUGC---UCUCUU---GCUuGCUCUcuCCG- -5'
10864 5' -51.7 NC_002794.1 + 94279 0.67 0.988706
Target:  5'- cGCGGCGcGGcc-CGAGCGGGGGGcGGCu -3'
miRNA:   3'- -UGCUGCuCUcuuGCUUGCUCUCU-CCG- -5'
10864 5' -51.7 NC_002794.1 + 71787 0.67 0.988706
Target:  5'- cGCGGCGAGucgccccccGGCGGGCGcGGcGAGGCc -3'
miRNA:   3'- -UGCUGCUCuc-------UUGCUUGCuCU-CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 108351 0.68 0.987228
Target:  5'- gUGGCGgagcGGGGAGCGGAgGAGGaccGGGCg -3'
miRNA:   3'- uGCUGC----UCUCUUGCUUgCUCUc--UCCG- -5'
10864 5' -51.7 NC_002794.1 + 21513 0.68 0.987228
Target:  5'- cCGGCucGAGGACGGGCGGaucGGGAucGGCu -3'
miRNA:   3'- uGCUGcuCUCUUGCUUGCU---CUCU--CCG- -5'
10864 5' -51.7 NC_002794.1 + 191931 0.68 0.987228
Target:  5'- -aGACGAGAGGAuCGGcgGCGAGuccuccGAcGGCu -3'
miRNA:   3'- ugCUGCUCUCUU-GCU--UGCUCu-----CU-CCG- -5'
10864 5' -51.7 NC_002794.1 + 112111 0.68 0.987228
Target:  5'- cGCGGcCGGGAcGACGGcGCGGG-GAGGUa -3'
miRNA:   3'- -UGCU-GCUCUcUUGCU-UGCUCuCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 45259 0.68 0.987072
Target:  5'- gACGACGGcgcgacaguccuuGAGAAUGAugG-GAcuguacGAGGCg -3'
miRNA:   3'- -UGCUGCU-------------CUCUUGCUugCuCU------CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 53819 0.68 0.987072
Target:  5'- uCGGCGGGAGccuCG-GCGGGAGccucgacGGGCg -3'
miRNA:   3'- uGCUGCUCUCuu-GCuUGCUCUC-------UCCG- -5'
10864 5' -51.7 NC_002794.1 + 64800 0.68 0.983827
Target:  5'- cGCGGCGAGcGAcgccGCGGACGGcggcGAGccGGCg -3'
miRNA:   3'- -UGCUGCUCuCU----UGCUUGCU----CUCu-CCG- -5'
10864 5' -51.7 NC_002794.1 + 136128 0.68 0.981889
Target:  5'- gGCGAaguCGaAGAGGA-GGGCGAGgacGGGGGCg -3'
miRNA:   3'- -UGCU---GC-UCUCUUgCUUGCUC---UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 123801 0.68 0.981889
Target:  5'- gGCGccguuCGGGGGcGCGGACGAGcAGGagcGGCg -3'
miRNA:   3'- -UGCu----GCUCUCuUGCUUGCUC-UCU---CCG- -5'
10864 5' -51.7 NC_002794.1 + 88063 0.68 0.981889
Target:  5'- cGCGcGCGAGGGGGCGGggccGCGGuuuGAacGGGGCg -3'
miRNA:   3'- -UGC-UGCUCUCUUGCU----UGCU---CU--CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 142605 0.68 0.980646
Target:  5'- gAUGACGAGcuGGcgcACGGGCGAGuacagcgcgagccgcAGGGGCu -3'
miRNA:   3'- -UGCUGCUCu-CU---UGCUUGCUC---------------UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 32631 0.68 0.979782
Target:  5'- cCGACGAagagGGGGGCGA-CGAccGGGGCg -3'
miRNA:   3'- uGCUGCU----CUCUUGCUuGCUcuCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 185361 0.69 0.977497
Target:  5'- cGCGAgCGGGccGAACGccGCGAGcGAGGCc -3'
miRNA:   3'- -UGCU-GCUCu-CUUGCu-UGCUCuCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 101569 0.69 0.977497
Target:  5'- cCGGCGGGAGugcCGGccgccGCGgccGGGGGGGCg -3'
miRNA:   3'- uGCUGCUCUCuu-GCU-----UGC---UCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 140125 0.69 0.977497
Target:  5'- uCGACG-GuGGGCGggUGGGGaacgacGAGGCg -3'
miRNA:   3'- uGCUGCuCuCUUGCuuGCUCU------CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 115967 0.69 0.977497
Target:  5'- cCGugGgGGGGAGCGGGacgGGGAGcGGCg -3'
miRNA:   3'- uGCugC-UCUCUUGCUUg--CUCUCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.