miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10864 5' -51.7 NC_002794.1 + 51257 0.74 0.833025
Target:  5'- -aGGCGuGGGGGCGGGcCGGGAGgcAGGCg -3'
miRNA:   3'- ugCUGCuCUCUUGCUU-GCUCUC--UCCG- -5'
10864 5' -51.7 NC_002794.1 + 53819 0.68 0.987072
Target:  5'- uCGGCGGGAGccuCG-GCGGGAGccucgacGGGCg -3'
miRNA:   3'- uGCUGCUCUCuu-GCuUGCUCUC-------UCCG- -5'
10864 5' -51.7 NC_002794.1 + 55161 0.69 0.969507
Target:  5'- cACGAguCGAGcgccGAGCGGGCGAcucGAGGCg -3'
miRNA:   3'- -UGCU--GCUCu---CUUGCUUGCUcu-CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 55248 0.74 0.833025
Target:  5'- gACGACGAgGAGGACGc-CGAagagccGGGGGGCg -3'
miRNA:   3'- -UGCUGCU-CUCUUGCuuGCU------CUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 55290 0.73 0.860196
Target:  5'- gGCGACGAGGGcggcggcggcgucgcGGCGGGCGcGGGcGGCu -3'
miRNA:   3'- -UGCUGCUCUC---------------UUGCUUGCuCUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 58070 0.66 0.994217
Target:  5'- gGCGGCGGcGGGACGGGCGGccc-GGCg -3'
miRNA:   3'- -UGCUGCUcUCUUGCUUGCUcucuCCG- -5'
10864 5' -51.7 NC_002794.1 + 60483 0.67 0.993338
Target:  5'- cGCGGCGAcacgGAGAuccaguacgucuGCGucGACGgcacGGAGGGGCu -3'
miRNA:   3'- -UGCUGCU----CUCU------------UGC--UUGC----UCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 62484 0.66 0.996847
Target:  5'- uCGACGAGcgcGAGUGGACGGcGGGcGGCg -3'
miRNA:   3'- uGCUGCUCu--CUUGCUUGCU-CUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 63458 0.66 0.996847
Target:  5'- gGCGGCGAcGAuGACGA-CGAG-GcGGCg -3'
miRNA:   3'- -UGCUGCU-CUcUUGCUuGCUCuCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 64693 0.72 0.886371
Target:  5'- gACGGCGAGGcGAgcGCGGACGAGGacgacgacgacGAGGa -3'
miRNA:   3'- -UGCUGCUCU-CU--UGCUUGCUCU-----------CUCCg -5'
10864 5' -51.7 NC_002794.1 + 64800 0.68 0.983827
Target:  5'- cGCGGCGAGcGAcgccGCGGACGGcggcGAGccGGCg -3'
miRNA:   3'- -UGCUGCUCuCU----UGCUUGCU----CUCu-CCG- -5'
10864 5' -51.7 NC_002794.1 + 66632 0.66 0.994999
Target:  5'- gUGGCGGGAGGAgGucCGuccGGGGGCa -3'
miRNA:   3'- uGCUGCUCUCUUgCuuGCuc-UCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 67934 0.66 0.996847
Target:  5'- aGCGACGGGGcGAuggccuCGAcCGAG-GAcGGCg -3'
miRNA:   3'- -UGCUGCUCU-CUu-----GCUuGCUCuCU-CCG- -5'
10864 5' -51.7 NC_002794.1 + 70265 0.7 0.949544
Target:  5'- aGCGACGgaggccgcgaaggccGGAGAGCaGGCcGGGGGGGCc -3'
miRNA:   3'- -UGCUGC---------------UCUCUUGcUUGcUCUCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 71787 0.67 0.988706
Target:  5'- cGCGGCGAGucgccccccGGCGGGCGcGGcGAGGCc -3'
miRNA:   3'- -UGCUGCUCuc-------UUGCUUGCuCU-CUCCG- -5'
10864 5' -51.7 NC_002794.1 + 72422 0.71 0.928816
Target:  5'- cGCGGCG-GAGGAgGAGCcggcgGAGGGAccGGCg -3'
miRNA:   3'- -UGCUGCuCUCUUgCUUG-----CUCUCU--CCG- -5'
10864 5' -51.7 NC_002794.1 + 79985 0.77 0.682342
Target:  5'- gGCGACGAggaggcggagGAGGACGAggacggcgACGAG-GAGGCc -3'
miRNA:   3'- -UGCUGCU----------CUCUUGCU--------UGCUCuCUCCG- -5'
10864 5' -51.7 NC_002794.1 + 83049 0.69 0.965804
Target:  5'- cACGGCG-GAGGACGAGCGcccacccacGGGCg -3'
miRNA:   3'- -UGCUGCuCUCUUGCUUGCucuc-----UCCG- -5'
10864 5' -51.7 NC_002794.1 + 84017 0.7 0.943445
Target:  5'- cACGACGGGc--ACGAGCGAcgcGAGcGGCa -3'
miRNA:   3'- -UGCUGCUCucuUGCUUGCU---CUCuCCG- -5'
10864 5' -51.7 NC_002794.1 + 88063 0.68 0.981889
Target:  5'- cGCGcGCGAGGGGGCGGggccGCGGuuuGAacGGGGCg -3'
miRNA:   3'- -UGC-UGCUCUCUUGCU----UGCU---CU--CUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.